Factsheet for VIT_12s0028g02380.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053310.2.1	Tomato	cytosol	69.69	70.67
PGSC0003DMT400052626	Potato	nucleus	69.69	70.67
KRH27034	Soybean	nucleus	69.69	69.44
KRH22295	Soybean	nucleus	68.29	68.53
EES01071	Sorghum	cytosol	65.85	65.62
CDX88994	Canola	nucleus	66.2	64.41
Zm00001d044470_P006	Maize	cytosol, nucleus, peroxisome	64.81	64.36
CDY00574	Canola	nucleus	65.85	64.07
Bra014563.1-P	Field mustard	nucleus	65.51	63.73
AT3G58600.1	Thale cress	nucleus	66.9	63.58
Os01t0614700-01	Rice	nucleus	65.85	60.97
TraesCS3D01G232100.1	Wheat	cytosol	64.46	60.26
TraesCS3A01G220500.1	Wheat	cytosol	63.76	59.61
GSMUA_Achr6P21420_001	Banana	nucleus	37.28	53.23
CDY49234	Canola	nucleus	44.25	52.7
HORVU3Hr1G054050.3	Barley	plastid	63.41	43.44
GSMUA_Achr6P21430_001	Banana	cytosol, peroxisome, plastid	31.71	43.33
TraesCS3B01G250800.1	Wheat	nucleus	64.11	42.49
VIT_07s0005g03660.t01	Wine grape	cytosol	28.57	29.5

Protein Annotations

EntrezGene:100245387	wikigene:100245387	Gene3D:2.30.29.30	MapMan:35.1	ProteinID:CBI21964	ProteinID:CBI21964.3
UniProt:E0CTP8	EMBL:FN595235	GO:GO:0005575	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150
GO:GO:0016020	InterPro:IPR011993	EntrezGene:LOC100245387	wikigene:LOC100245387	InterPro:NECAP_PHear	PFAM:PF07933
InterPro:PH-like_dom_sf	PANTHER:PTHR12847	PANTHER:PTHR12847:SF4	SUPFAM:SSF50729	UniParc:UPI00015C9662	ArrayExpress:VIT_12s0028g02380
EnsemblPlantsGene:VIT_12s0028g02380	EnsemblPlants:VIT_12s0028g02380.t01	unigene:Vvi.18521	RefSeq:XP_002280009	RefSeq:XP_002280009.2	SEG:seg

Description

No Description!

Coordinates

chr12:+:3113879..3120333

Molecular Weight (calculated)

32458.8 Da

IEP (calculated)

4.756

GRAVY (calculated)

-0.859

Length

287 amino acids

Sequence
(BLAST)

001: MDIEEKISNN QEGVDDSEET EAVELILFQV SECYVYLIPP RKSAASYRAD EWNVNKWAWE GTLKVVSKGE ECIIKLEDKK TGELYARAFL RNGEPHPVEP
101: VIDSSRYFVL RIEENIGGRL RHAFIGLGFR ERPEAYDFQA ALHDHMKYLN KKKTAEEMEQ HYQKASSVDY SLKDGETLVL QIKNKSGHGV KSKFFEQQSM
201: NNLSLEEKTN QKEPICIKPP PPPPGPLSPA AKGPNSPSNW VPNFNLEGTS KDEAQDSIRE SKEPPSLEKQ GPQDTPDDDF GDFQTAG

Best Arabidopsis Sequence Match ( AT3G58600.1 )
(BLAST)

001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG

Arabidopsis Description

Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.