Factsheet for HORVU3Hr1G054050.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid, vacuole
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G220500.1	Wheat	cytosol	61.1	83.39
TraesCS3D01G232100.1	Wheat	cytosol	60.38	82.41
EES01071	Sorghum	cytosol	51.79	75.35
Zm00001d044470_P006	Maize	cytosol, nucleus, peroxisome	51.07	74.05
Os01t0614700-01	Rice	nucleus	53.22	71.94
Solyc07g053310.2.1	Tomato	cytosol	44.39	65.72
PGSC0003DMT400052626	Potato	nucleus	43.68	64.66
KRH27034	Soybean	nucleus	43.91	63.89
VIT_12s0028g02380.t01	Wine grape	nucleus	43.44	63.41
KRH22295	Soybean	nucleus	43.2	63.29
CDY00574	Canola	nucleus	43.2	61.36
CDX88994	Canola	nucleus	43.2	61.36
Bra014563.1-P	Field mustard	nucleus	42.96	61.02
TraesCS3B01G250800.1	Wheat	nucleus	62.29	60.28
AT3G58600.1	Thale cress	nucleus	43.44	60.26
GSMUA_Achr6P21420_001	Banana	nucleus	25.78	53.73
CDY49234	Canola	nucleus	30.79	53.53

Protein Annotations

EnsemblPlants:HORVU3Hr1G054050.3	EnsemblPlantsGene:HORVU3Hr1G054050	Gene3D:2.30.29.30	GO:GO:0005575	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	InterPro:PH-like_dom_sf	PANTHER:PTHR12847
PANTHER:PTHR12847:SF4	PFAM:PF07933	SEG:seg	SUPFAM:SSF50729	UniParc:UPI000B4633C1	UniProt:A0A287L372
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:398399954..398403200

Molecular Weight (calculated)

45777.6 Da

IEP (calculated)

5.336

GRAVY (calculated)

-0.485

Length

419 amino acids

Sequence
(BLAST)

001: PEANSKRLPL PLPLSIPPTF HVLLSLSPHP QPKDPSSSSH SVSPHSELGS NHCLSHRTPS KSPTHPIRSS PAKRGLYPYL DSAAGAMASG SEQPQAETEP
101: EAVELVLFQV AECYVYLIPP RKTAASYRAD EWNVNKWAWE GALKVVSRGE ECVIKLEDKS TGTVISLLLV IPCSVCNPDF LISLVISGEL YARAFLREGE
201: PHPVEAVIDS SRYFVLRVEE NIDGRQRHAF IGLGFRERTE AYDFQAALHD HMKYLNKKKT AEEMVQHYEN TSSVDYSLKE GETLVLQIKN KESGSKTKSA
301: FFEQGLNKLS FNDKANSKEG TVSLKLPPPP PSPVSPTDSG VAMSPFKAEF PSQEQAGTGN SEDVAAPFKA EFPSQEALDD TIEAKAEAAP RNQPAAAEKS
401: KQGSVDDEFD FGDFQAAAA

Best Arabidopsis Sequence Match ( AT3G58600.1 )
(BLAST)

001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG

Arabidopsis Description

Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.