Factsheet for PGSC0003DMT400052626

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g053310.2.1	Tomato	cytosol	92.23	92.23
VIT_12s0028g02380.t01	Wine grape	nucleus	70.67	69.69
KRH27034	Soybean	nucleus	70.67	69.44
KRH22295	Soybean	nucleus	68.2	67.48
CDX88994	Canola	nucleus	66.43	63.73
Bra014563.1-P	Field mustard	nucleus	66.08	63.39
CDY00574	Canola	nucleus	66.08	63.39
EES01071	Sorghum	cytosol	64.31	63.19
Zm00001d044470_P006	Maize	cytosol, nucleus, peroxisome	63.25	61.94
AT3G58600.1	Thale cress	nucleus	64.31	60.26
Os01t0614700-01	Rice	nucleus	65.37	59.68
TraesCS3D01G232100.1	Wheat	cytosol	64.31	59.28
TraesCS3A01G220500.1	Wheat	cytosol	63.25	58.31
CDY49234	Canola	nucleus	45.94	53.94
GSMUA_Achr6P21420_001	Banana	nucleus	34.98	49.25
HORVU3Hr1G054050.3	Barley	plastid	64.66	43.68
TraesCS3B01G250800.1	Wheat	nucleus	63.6	41.57
GSMUA_Achr6P21430_001	Banana	cytosol, peroxisome, plastid	30.39	40.95
PGSC0003DMT400065575	Potato	cytosol	21.55	35.47
PGSC0003DMT400026697	Potato	cytosol	28.27	28.17
PGSC0003DMT400065577	Potato	cytosol	26.15	27.01

Protein Annotations

EnsemblPlants:PGSC0003DMT400052626	EnsemblPlantsGene:PGSC0003DMG400020428	EntrezGene:102595117	Gene3D:2.30.29.30	GO:GO:0005575	GO:GO:0006810
GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	InterPro:PH-like_dom_sf
PANTHER:PTHR12847	PANTHER:PTHR12847:SF4	PFAM:PF07933	PGSC:PGSC0003DMG400020428	RefSeq:XP_006348852.1	SEG:seg
SUPFAM:SSF50729	UniParc:UPI000295E072	UniProt:M1BTQ3	MapMan:35.1	:	:

Description

Adaptin ear-binding coat-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG400020428]

Coordinates

chr7:-:50038876..50044780

Molecular Weight (calculated)

31827.2 Da

IEP (calculated)

4.774

GRAVY (calculated)

-0.810

Length

283 amino acids

Sequence
(BLAST)

001: MEKENKLTEG TSEIEEPIEV PLFQVPECYV YLIPPRKSAA SYRADEWNVN KWAWEGTLKV LSKGEECIIK LEDKETGELY ARAFLRDGEP HPVEAVIDSS
101: RYFVLRIEEN IGGRLRHAFI GIGFRERPEA YDFQAALHDH QKYLNKKKTA EEMEQQYQKS SSVDYSLKEG ETLKLQIKNK PGGTIRSKFF EQGLNNLSLE
201: EKANRKDSTI LLKPPPPPPA PLSPVATDAR SPPVSPSKLS LEQSAETKDS ATAKEEPDKS ESVKEQGPQD VADDDFGDFQ AAG

Best Arabidopsis Sequence Match ( AT3G58600.1 )
(BLAST)

001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG

Arabidopsis Description

Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.