Factsheet for PGSC0003DMT400065575

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400024215
PGSC0003DMT400064306

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03900.1	PGSC0003DMT400024215	AT1G09700.1	21798944
AT1G03900.1	PGSC0003DMT400064306	AT2G23290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065577	Potato	cytosol	96.51	60.58
Solyc06g008340.2.1	Tomato	cytosol	94.19	59.12
PGSC0003DMT400026697	Potato	cytosol	84.88	51.41
CDX86664	Canola	nucleus	78.49	50.56
AT1G03900.1	Thale cress	nucleus	78.49	49.63
VIT_07s0005g03660.t01	Wine grape	cytosol	79.65	49.28
Bra030548.1-P	Field mustard	nucleus	78.49	49.27
CDY15480	Canola	nucleus	77.91	48.91
Bra015277.1-P	Field mustard	nucleus	77.33	48.72
CDX89856	Canola	nucleus	77.33	48.72
KRH19576	Soybean	cytosol	78.49	47.54
KRH32201	Soybean	cytosol	77.33	47.33
EER94087	Sorghum	cytosol	77.91	47.18
Zm00001d014039_P001	Maize	cytosol	77.91	47.18
TraesCS1A01G153300.1	Wheat	cytosol	76.74	47.14
TraesCS1B01G171600.1	Wheat	cytosol	76.74	47.14
TraesCS1D01G151800.1	Wheat	cytosol	76.74	47.14
GSMUA_Achr5P03850_001	Banana	nucleus	76.16	46.29
Os10t0476000-01	Rice	cytosol	76.16	45.64
GSMUA_AchrUn_...	Banana	nucleus	75.0	45.1
PGSC0003DMT400052626	Potato	nucleus	35.47	21.55

Protein Annotations

EnsemblPlants:PGSC0003DMT400065575	EnsemblPlantsGene:PGSC0003DMG402025510	Gene3D:2.30.29.30	GO:GO:0005575	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	InterPro:PH-like_dom_sf	PANTHER:PTHR12847
PANTHER:PTHR12847:SF3	PFAM:PF07933	PGSC:PGSC0003DMG402025510	SUPFAM:SSF50729	UniParc:UPI000294FAA8	UniProt:M1CEA1
MapMan:35.1	:	:	:	:	:

Description

Adaptin ear-binding coat-associated protein [Source:PGSC_GENE;Acc:PGSC0003DMG402025510]

Coordinates

chr6:+:1612306..1613090

Molecular Weight (calculated)

19547.9 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.469

Length

172 amino acids

Sequence
(BLAST)

001: MSFEEDKESF EHTLLVVREV NVFKIPPRPT SGGYKCGEWL QTDKIWSGRL RVVSCKDRCE IRLEDPNSGE LFAACFVPPG QRESSVESVL DSSRYFVLKI
101: EDGTGKHAFI GLGFSERNEA FDFNVALSDH EKYVKRDAEK DGDEAETSSD GHIDIHPAVN HRLKVFEFCL IM

Best Arabidopsis Sequence Match ( AT1G03900.1 )
(BLAST)

001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF

Arabidopsis Description

ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.