CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH28419
KRH52961
KRH57983
KRH62246
KRH77058

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03900.1	KRH52961	AT1G09700.1	21798944
AT1G03900.1	KRH62246	AT1G09700.1	21798944
AT1G03900.1	KRH28419	AT2G23290.1	21798944
AT1G03900.1	KRH57983	AT2G23290.1	21798944
AT1G03900.1	KRH77058	AT2G23290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32201	Soybean	cytosol	94.01	95.02
PGSC0003DMT400065575	Potato	cytosol	47.54	78.49
VIT_07s0005g03660.t01	Wine grape	cytosol	76.06	77.7
Bra015277.1-P	Field mustard	nucleus	72.18	75.09
CDX89856	Canola	nucleus	71.83	74.73
AT1G03900.1	Thale cress	nucleus	71.48	74.63
CDX86664	Canola	nucleus	69.01	73.41
PGSC0003DMT400026697	Potato	cytosol	73.24	73.24
Solyc09g066490.2.1	Tomato	cytosol	72.54	72.79
Bra030548.1-P	Field mustard	nucleus	70.07	72.63
CDY15480	Canola	nucleus	69.72	72.26
GSMUA_Achr5P03850_001	Banana	nucleus	71.83	72.08
GSMUA_AchrUn_...	Banana	nucleus	72.54	72.03
PGSC0003DMT400065577	Potato	cytosol	69.01	71.53
Solyc06g008340.2.1	Tomato	cytosol	69.01	71.53
Os10t0476000-01	Rice	cytosol	71.83	71.08
EER94087	Sorghum	cytosol	70.42	70.42
Zm00001d014039_P001	Maize	cytosol	70.42	70.42
TraesCS1A01G153300.1	Wheat	cytosol	69.01	70.0
TraesCS1D01G151800.1	Wheat	cytosol	68.66	69.64
TraesCS1B01G171600.1	Wheat	cytosol	67.96	68.93
KRH22295	Soybean	nucleus	29.58	29.37
KRH27034	Soybean	nucleus	28.87	28.47

Protein Annotations

EMBL:ACUP02008191	EnsemblPlants:KRH19576	EnsemblPlantsGene:GLYMA_13G124500	EntrezGene:100787962	Gene3D:2.30.29.30	GO:GO:0005575
GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear
InterPro:PH-like_dom_sf	PANTHER:PTHR12847	PANTHER:PTHR12847:SF3	PFAM:PF07933	ProteinID:KRH19576	ProteinID:KRH19576.1
SEG:seg	SUPFAM:SSF50729	UniParc:UPI000233C06E	UniProt:I1LYM0	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr13:+:23798897..23801430

Molecular Weight (calculated)

30704.9 Da

IEP (calculated)

6.678

GRAVY (calculated)

-0.502

Length

284 amino acids

Sequence
(BLAST)

001: MSFEVEEEEE AFEHTLLVVR EVSVYKIPPR STSGGYKCGE WLQSDKIWSG RIRVVSRRDR CEIRLEDPSS GELFAACFVY PGQRETAVEP VLDSSRYFVL
101: KIEDGQGKHA FIGLGFNERN EAFDFNVALS DHEKYVRREH EKEAGHGAAA AAEESQIDIH PAVNHRLKEG ETIRINVKHK STSGTGMLSA AGLTGGHAAT
201: PKPKTVSLAP PPSGAGKIRS PLPPPPNDPV AARIASTGCA TGPKGTYESV KHSTDALSDF SQLQKNLPST TTSGSTTASG WAAF

Best Arabidopsis Sequence Match ( AT1G03900.1 )
(BLAST)

001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF

Arabidopsis Description

ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.