CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER98550
KXG22802
OQU82704

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03900.1	KXG22802	AT1G09700.1	21798944
AT1G03900.1	OQU82704	AT1G09700.1	21798944
AT1G03900.1	EER98550	AT2G23290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014039_P001	Maize	cytosol	99.65	99.65
Os10t0476000-01	Rice	cytosol	87.68	86.76
TraesCS1D01G151800.1	Wheat	cytosol	84.15	85.36
TraesCS1B01G171600.1	Wheat	cytosol	83.8	85.0
TraesCS1A01G153300.1	Wheat	cytosol	83.8	85.0
PGSC0003DMT400065575	Potato	cytosol	47.18	77.91
GSMUA_AchrUn_...	Banana	nucleus	74.65	74.13
GSMUA_Achr5P03850_001	Banana	nucleus	73.24	73.5
VIT_07s0005g03660.t01	Wine grape	cytosol	71.13	72.66
CDX86664	Canola	nucleus	68.31	72.66
AT1G03900.1	Thale cress	nucleus	69.01	72.06
Bra030548.1-P	Field mustard	nucleus	69.01	71.53
CDY15480	Canola	nucleus	68.66	71.17
Bra015277.1-P	Field mustard	nucleus	67.96	70.7
KRH19576	Soybean	cytosol	70.42	70.42
CDX89856	Canola	nucleus	67.61	70.33
KRH32201	Soybean	cytosol	69.01	69.75
PGSC0003DMT400026697	Potato	cytosol	69.72	69.72
Solyc09g066490.2.1	Tomato	cytosol	69.37	69.61
Solyc06g008340.2.1	Tomato	cytosol	66.55	68.98
PGSC0003DMT400065577	Potato	cytosol	66.2	68.61
EES01071	Sorghum	cytosol	32.75	32.29

Protein Annotations

Gene3D:2.30.29.30	MapMan:35.1	UniProt:C5WYH0	EnsemblPlants:EER94087	ProteinID:EER94087	ProteinID:EER94087.1
GO:GO:0005575	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993
ProteinID:KXG38340.1	InterPro:NECAP_PHear	PFAM:PF07933	InterPro:PH-like_dom_sf	PANTHER:PTHR12847	PANTHER:PTHR12847:SF3
EnsemblPlantsGene:SORBI_3001G220900	SUPFAM:SSF50729	unigene:Sbi.3698	UniParc:UPI0001A827EA	RefSeq:XP_002467089.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:20774311..20777421

Molecular Weight (calculated)

30405.8 Da

IEP (calculated)

7.036

GRAVY (calculated)

-0.521

Length

284 amino acids

Sequence
(BLAST)

001: MASSLAEEEE AFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCGDR CEIRLEDPAT GELFAACFVL PGQRESAVET VLDSSRYFVL
101: RIEDGRGKHA FVGLGFNERN EAFDFNVALS DHEKYVKREQ EKETAGAGGE ETGGGEIDIH PAVNRRLKEG ETIRITVKNK PSTGSGMLSA AGLSGGTTAK
201: PKTSMLLAPP PGAAGKLRSP LPPPPNDPAA ARMNSGHTAG IRAPKEPTKR NNDPFSDLSA IKQNLPSSAE PGQTKSTGAG WAAF

Best Arabidopsis Sequence Match ( AT1G03900.1 )
(BLAST)

001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF

Arabidopsis Description

ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.