Factsheet for Os10t0476000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Os05t0307400-01
Os09t0106700-01
Os11t0109900-01
Os12t0109900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03900.1	Os05t0307400-01	AT1G09700.1	21798944
AT1G03900.1	Os11t0109900-01	AT1G09700.1	21798944
AT1G03900.1	Os12t0109900-02	AT1G09700.1	21798944
AT1G03900.1	Os09t0106700-01	AT2G23290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014039_P001	Maize	cytosol	86.76	87.68
EER94087	Sorghum	cytosol	86.76	87.68
TraesCS1D01G151800.1	Wheat	cytosol	84.32	86.43
TraesCS1A01G153300.1	Wheat	cytosol	84.32	86.43
TraesCS1B01G171600.1	Wheat	cytosol	83.97	86.07
PGSC0003DMT400065575	Potato	cytosol	45.64	76.16
GSMUA_Achr5P03850_001	Banana	nucleus	73.17	74.2
GSMUA_AchrUn_...	Banana	nucleus	73.87	74.13
VIT_07s0005g03660.t01	Wine grape	cytosol	70.38	72.66
CDX86664	Canola	nucleus	67.25	72.28
KRH19576	Soybean	cytosol	71.08	71.83
AT1G03900.1	Thale cress	nucleus	67.94	71.69
Bra030548.1-P	Field mustard	nucleus	68.29	71.53
KRH32201	Soybean	cytosol	69.69	71.17
CDY15480	Canola	nucleus	67.94	71.17
Bra015277.1-P	Field mustard	nucleus	66.9	70.33
CDX89856	Canola	nucleus	66.55	69.96
PGSC0003DMT400026697	Potato	cytosol	68.29	69.01
Solyc06g008340.2.1	Tomato	cytosol	65.85	68.98
Solyc09g066490.2.1	Tomato	cytosol	67.94	68.9
PGSC0003DMT400065577	Potato	cytosol	65.16	68.25
Os01t0614700-01	Rice	nucleus	31.71	29.35

Protein Annotations

Gene3D:2.30.29.30	MapMan:35.1	EntrezGene:4348888	ProteinID:AAK13159.1	ProteinID:AAL31050.1	ProteinID:AAP54265.1
EMBL:AK065629	ProteinID:BAF26758.1	ProteinID:BAT11290.1	ProteinID:EAZ16411.1	GO:GO:0005575	GO:GO:0006810
GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	EnsemblPlantsGene:Os10g0476000
EnsemblPlants:Os10t0476000-01	PFAM:PF07933	InterPro:PH-like_dom_sf	PANTHER:PTHR12847	PANTHER:PTHR12847:SF3	UniProt:Q9AUZ3
SUPFAM:SSF50729	UniParc:UPI000009EECF	RefSeq:XP_015614217.1	SEG:seg	:	:

Description

ABC TRANSPORTER I FAMILY MEMBER 16Adaptin ear-binding coat-associated protein 1 NECAP-1 family protein. (Os10t0476000-01);Similar to Adaptin ear-binding coat-associated protein 2. (Os10t0476000-02)

Coordinates

chr10:+:17726512..17729548

Molecular Weight (calculated)

30525.8 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.512

Length

287 amino acids

Sequence
(BLAST)

001: MAGVGVEEEE AFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDRIWSG RLRVVSCGDR CEIRLEDPAS GDLFAACFVL PGQREAAVET VLDSSRYFVL
101: RIEDGRGKHA FVGLGFGERN EAFDFNVALS DHEKYVKREH EKEAADGGAG GGEENDDGQI DIHPAVNRRL KEGETIRINV KNKPSTGSGM LSSAGLSGGA
201: SAKPKASMLL APPPGSAGKL RSPLPPPPND PAAARMNSGS NAGIRAPKEP AKRNSDAFSD LSAMKQNLPS STESAQTKST GAGWAAF

Best Arabidopsis Sequence Match ( AT1G03900.1 )
(BLAST)

001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF

Arabidopsis Description

ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.