CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89554
CDX93488
CDX94957
CDY20678
CDY31070
CDY38933

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03900.1	CDX93488	AT1G09700.1	21798944
AT1G03900.1	CDX94957	AT1G09700.1	21798944
AT1G03900.1	CDY20678	AT1G09700.1	21798944
AT1G03900.1	CDY31070	AT1G09700.1	21798944
AT1G03900.1	CDX89554	AT2G23290.1	21798944
AT1G03900.1	CDY38933	AT2G23290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15480	Canola	nucleus	97.0	94.53
AT1G03900.1	Thale cress	nucleus	92.13	90.44
CDX89856	Canola	nucleus	90.26	88.28
PGSC0003DMT400065575	Potato	cytosol	50.56	78.49
VIT_07s0005g03660.t01	Wine grape	cytosol	75.28	72.3
PGSC0003DMT400065577	Potato	cytosol	72.28	70.44
Solyc06g008340.2.1	Tomato	cytosol	71.54	69.71
Solyc09g066490.2.1	Tomato	cytosol	73.78	69.61
PGSC0003DMT400026697	Potato	cytosol	73.78	69.37
KRH19576	Soybean	cytosol	73.41	69.01
KRH32201	Soybean	cytosol	72.28	68.68
Zm00001d014039_P001	Maize	cytosol	72.66	68.31
EER94087	Sorghum	cytosol	72.66	68.31
GSMUA_Achr5P03850_001	Banana	nucleus	71.91	67.84
Os10t0476000-01	Rice	cytosol	72.28	67.25
TraesCS1A01G153300.1	Wheat	cytosol	70.41	67.14
TraesCS1B01G171600.1	Wheat	cytosol	70.04	66.79
TraesCS1D01G151800.1	Wheat	cytosol	70.04	66.79
GSMUA_AchrUn_...	Banana	nucleus	69.66	65.03
CDX88994	Canola	nucleus	30.34	27.46
CDY00574	Canola	nucleus	29.96	27.12
CDY49234	Canola	nucleus	20.97	23.24

Protein Annotations

EnsemblPlants:CDX86664	EnsemblPlantsGene:GSBRNA2T00145332001	Gene3D:2.30.29.30	GO:A0A078DE68	GO:GO:0005575	GO:GO:0006810
GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	InterPro:PH-like_dom_sf
PANTHER:PTHR12847	PANTHER:PTHR12847:SF3	PFAM:PF07933	ProteinID:CDX86664	ProteinID:CDX86664.1	SEG:seg
SUPFAM:SSF50729	UniParc:UPI0004EE7A15	MapMan:35.1	:	:	:

Description

BnaC08g00390D

Coordinates

chrLK031846:-:1424805..1426659

Molecular Weight (calculated)

29454.4 Da

IEP (calculated)

7.972

GRAVY (calculated)

-0.705

Length

267 amino acids

Sequence
(BLAST)

001: MSFEEEEKET FEHTLLVVRE VSVYKIPPRT TSGGYKCGEW LQSDKIWSGR LRVVSCKDRC EIRLEDSNSG DLFAACFVDP GRRENSVEPS LDSSRYFVLR
101: IDDGRGKYAF IGLGFAERNE AFDFNVALSD HEKYVRREKE KESESNDHID IHPAVNHRLK EGETIRINVK PKPTTNGTGM LSAALSGNGK PLALAPPPTA
201: ATKTRSPLPP PPNDPVTSRI SSDSSAGNTR RRNDPLFDLS QLKKNLPSTQ GSGPTKSTGA ASGWAAF

Best Arabidopsis Sequence Match ( AT1G03900.1 )
(BLAST)

001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF

Arabidopsis Description

ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.