Factsheet for AT1G03900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030548.1-P	Field mustard	nucleus	93.01	92.34
CDX86664	Canola	nucleus	90.44	92.13
CDY15480	Canola	nucleus	92.65	91.97
Bra015277.1-P	Field mustard	nucleus	90.44	90.11
CDX89856	Canola	nucleus	90.07	89.74
PGSC0003DMT400065575	Potato	cytosol	49.63	78.49
VIT_07s0005g03660.t01	Wine grape	cytosol	75.37	73.74
KRH19576	Soybean	cytosol	74.63	71.48
Solyc06g008340.2.1	Tomato	cytosol	71.32	70.8
KRH32201	Soybean	cytosol	72.79	70.46
PGSC0003DMT400065577	Potato	cytosol	70.96	70.44
PGSC0003DMT400026697	Potato	cytosol	73.53	70.42
Solyc09g066490.2.1	Tomato	cytosol	73.16	70.32
Zm00001d014039_P001	Maize	cytosol	72.06	69.01
EER94087	Sorghum	cytosol	72.06	69.01
Os10t0476000-01	Rice	cytosol	71.69	67.94
TraesCS1A01G153300.1	Wheat	cytosol	68.75	66.79
GSMUA_Achr5P03850_001	Banana	nucleus	69.49	66.78
TraesCS1B01G171600.1	Wheat	cytosol	68.38	66.43
TraesCS1D01G151800.1	Wheat	cytosol	68.38	66.43
GSMUA_AchrUn_...	Banana	nucleus	68.38	65.03
AT3G58600.1	Thale cress	nucleus	29.41	26.49

Protein Annotations

Gene3D:2.30.29.30	MapMan:35.1	EntrezGene:839378	UniProt:A0A178WMR3	ProteinID:AAD10694.1	ProteinID:AEE27630.1
EMBL:AK175162	EMBL:AK175560	EMBL:AK176343	EMBL:AK176412	ArrayExpress:AT1G03900	EnsemblPlantsGene:AT1G03900
RefSeq:AT1G03900	TAIR:AT1G03900	RefSeq:AT1G03900-TAIR-G	EnsemblPlants:AT1G03900.1	TAIR:AT1G03900.1	Symbol:ATNAP4
EMBL:AY042875	EMBL:AY072515	Unigene:At.23085	GO:GO:0003674	GO:GO:0003824	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787
GO:GO:0042626	GO:GO:0055085	InterPro:IPR011993	InterPro:NECAP_PHear	RefSeq:NP_563693.1	ProteinID:OAP19484.1
PFAM:PF07933	InterPro:PH-like_dom_sf	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009001
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009049
PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022
PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR12847	PANTHER:PTHR12847:SF3	UniProt:Q681Q7	SUPFAM:SSF50729
UniParc:UPI0000162C3D	SEG:seg	:	:	:	:

Description

ATNAP4NAP4 [Source:UniProtKB/TrEMBL;Acc:A0A178WMR3]

Coordinates

chr1:+:991106..993126

Molecular Weight (calculated)

29796.8 Da

IEP (calculated)

6.375

GRAVY (calculated)

-0.676

Length

272 amino acids

Sequence
(BLAST)

001: MSFEEEEEEE TFEHTLLVVR EVSVYKIPPR TTSGGYKCGE WLQSDKIWSG RLRVVSCKDR CEIRLEDSNS GDLFAACFVD PGRRENSVEP SLDSSRYFVL
101: RIDDGRGKYA FIGLGFAERN EAFDFNVALS DHEKYVRREK EKETGETSES DNHIDIHPAV NHRLKEGETI RINVKPKPTT NGTGMLSAAL SGTGKPKPLA
201: LAPPPKAAGV TRSPLPPPPN DPVASRIASD GCKESRRNEP LSDLSQLKKN LPSTAGSGSS KSTGAASGWA AF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.