Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014563.1-P | Field mustard | nucleus | 82.78 | 84.75 |
| CDX88994 | Canola | nucleus | 82.78 | 84.75 |
| CDY00574 | Canola | nucleus | 82.12 | 84.07 |
| CDY49234 | Canola | nucleus | 55.63 | 69.71 |
| KRH27034 | Soybean | nucleus | 65.56 | 68.75 |
| KRH22295 | Soybean | nucleus | 63.58 | 67.13 |
| VIT_12s0028g02380.t01 | Wine grape | nucleus | 63.58 | 66.9 |
| Solyc07g053310.2.1 | Tomato | cytosol | 61.59 | 65.72 |
| PGSC0003DMT400052626 | Potato | nucleus | 60.26 | 64.31 |
| EES01071 | Sorghum | cytosol | 58.61 | 61.46 |
| Zm00001d044470_P006 | Maize | cytosol, nucleus, peroxisome | 58.28 | 60.9 |
| TraesCS3D01G232100.1 | Wheat | cytosol | 61.26 | 60.26 |
| TraesCS3A01G220500.1 | Wheat | cytosol | 60.26 | 59.28 |
| Os01t0614700-01 | Rice | nucleus | 59.6 | 58.06 |
| GSMUA_Achr6P21420_001 | Banana | nucleus | 35.1 | 52.74 |
| HORVU3Hr1G054050.3 | Barley | plastid | 60.26 | 43.44 |
| TraesCS3B01G250800.1 | Wheat | nucleus | 60.93 | 42.49 |
| GSMUA_Achr6P21430_001 | Banana | cytosol, peroxisome, plastid | 28.15 | 40.48 |
| AT1G03900.1 | Thale cress | nucleus | 26.49 | 29.41 |
Protein Annotations
| Gene3D:2.30.29.30 | MapMan:35.1 | EntrezGene:825029 | UniProt:A0A178V7S2 | ProteinID:AEE79803.1 | ArrayExpress:AT3G58600 |
| EnsemblPlantsGene:AT3G58600 | RefSeq:AT3G58600 | TAIR:AT3G58600 | RefSeq:AT3G58600-TAIR-G | EnsemblPlants:AT3G58600.1 | TAIR:AT3G58600.1 |
| EMBL:BT001934 | ncoils:Coil | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006897 | GO:GO:0008150 |
| GO:GO:0016020 | InterPro:IPR011993 | InterPro:NECAP_PHear | RefSeq:NP_567071.1 | ProteinID:OAP01455.1 | PFAM:PF07933 |
| InterPro:PH-like_dom_sf | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12847 | PANTHER:PTHR12847:SF4 | UniProt:Q84WV7 |
| SUPFAM:SSF50729 | UniParc:UPI000000BD51 | SEG:seg | : | : | : |
Description
Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
Coordinates
chr3:-:21668515..21671292
Molecular Weight (calculated)
33919.4 Da
IEP (calculated)
4.475
GRAVY (calculated)
-0.802
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.