CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22295	Soybean	nucleus	92.36	93.01
Solyc07g053310.2.1	Tomato	cytosol	71.18	72.44
PGSC0003DMT400052626	Potato	nucleus	69.44	70.67
VIT_12s0028g02380.t01	Wine grape	nucleus	69.44	69.69
AT3G58600.1	Thale cress	nucleus	68.75	65.56
Bra014563.1-P	Field mustard	nucleus	66.67	65.08
CDX88994	Canola	nucleus	66.67	65.08
CDY00574	Canola	nucleus	66.32	64.75
EES01071	Sorghum	cytosol	64.24	64.24
Zm00001d044470_P006	Maize	cytosol, nucleus, peroxisome	62.85	62.63
TraesCS3D01G232100.1	Wheat	cytosol	64.93	60.91
TraesCS3A01G220500.1	Wheat	cytosol	64.24	60.26
Os01t0614700-01	Rice	nucleus	63.54	59.03
CDY49234	Canola	nucleus	46.18	55.19
GSMUA_Achr6P21420_001	Banana	nucleus	36.46	52.24
HORVU3Hr1G054050.3	Barley	plastid	63.89	43.91
TraesCS3B01G250800.1	Wheat	nucleus	64.58	42.96
GSMUA_Achr6P21430_001	Banana	cytosol, peroxisome, plastid	30.9	42.38
KRH32201	Soybean	cytosol	28.47	29.18
KRH19576	Soybean	cytosol	28.47	28.87

Protein Annotations

EMBL:ACUP02007762	EnsemblPlants:KRH27034	EnsemblPlantsGene:GLYMA_12G209800	EntrezGene:100799391	Gene3D:2.30.29.30	GO:GO:0005575
GO:GO:0006810	GO:GO:0006897	GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear
InterPro:PH-like_dom_sf	PANTHER:PTHR12847	PANTHER:PTHR12847:SF4	PFAM:PF07933	ProteinID:KRH27034	ProteinID:KRH27034.1
SEG:seg	SUPFAM:SSF50729	UniParc:UPI000233C73F	UniProt:I1LUL7	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr12:-:36897706..36901574

Molecular Weight (calculated)

32428.8 Da

IEP (calculated)

4.916

GRAVY (calculated)

-0.824

Length

288 amino acids

Sequence
(BLAST)

001: MEKEENEPHV QKSGGESEDA EPIELVLFQV PECYVYIIPP RKSAASYRAD EWDVNKWAWE GILKVTSKGE ECIIKLEDKS TGELYARAFL RNGEPHPVEP
101: VIDSSRYFVL RIEENIGGRL RHAFIGIGFR ERTEAYDFQA ALHDHMKYLN KKKTAEEMEQ HYQQTSSVDY SLKEGETLVL QIKTNKSGSS VKSKFFELGL
201: NKSPEEKNGG KESIPSIKLP PPPPAPLSPV FAAQKSPTNS PTKLSLEKTS KVETPKTVKE DTEHENSPEN RSTEDVPDDD FGDFQAAG

Best Arabidopsis Sequence Match ( AT3G58600.1 )
(BLAST)

001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG

Arabidopsis Description

Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.