Factsheet for Solyc07g053310.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400052626	Potato	nucleus	92.23	92.23
KRH27034	Soybean	nucleus	72.44	71.18
VIT_12s0028g02380.t01	Wine grape	nucleus	70.67	69.69
KRH22295	Soybean	nucleus	69.61	68.88
EES01071	Sorghum	cytosol	66.08	64.93
CDX88994	Canola	nucleus	66.43	63.73
Bra014563.1-P	Field mustard	nucleus	66.08	63.39
CDY00574	Canola	nucleus	66.08	63.39
Zm00001d044470_P006	Maize	cytosol, nucleus, peroxisome	64.66	63.32
AT3G58600.1	Thale cress	nucleus	65.72	61.59
Os01t0614700-01	Rice	nucleus	66.43	60.65
TraesCS3D01G232100.1	Wheat	cytosol	64.31	59.28
TraesCS3A01G220500.1	Wheat	cytosol	63.6	58.63
CDY49234	Canola	nucleus	45.94	53.94
GSMUA_Achr6P21420_001	Banana	nucleus	36.04	50.75
HORVU3Hr1G054050.3	Barley	plastid	65.72	44.39
TraesCS3B01G250800.1	Wheat	nucleus	64.31	42.03
GSMUA_Achr6P21430_001	Banana	cytosol, peroxisome, plastid	30.39	40.95
Solyc09g066490.2.1	Tomato	cytosol	28.62	28.62
Solyc06g008340.2.1	Tomato	cytosol	26.86	27.74

Protein Annotations

EnsemblPlants:Solyc07g053310.2.1	EnsemblPlantsGene:Solyc07g053310.2	Gene3D:2.30.29.30	GO:GO:0005575	GO:GO:0006810	GO:GO:0006897
GO:GO:0008150	GO:GO:0016020	InterPro:IPR011993	InterPro:NECAP_PHear	InterPro:PH-like_dom_sf	PANTHER:PTHR12847
PANTHER:PTHR12847:SF4	PFAM:PF07933	SEG:seg	SUPFAM:SSF50729	UniParc:UPI000276BE22	UniProt:K4CFM8
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:61779295..61784945

Molecular Weight (calculated)

31768.2 Da

IEP (calculated)

4.774

GRAVY (calculated)

-0.781

Length

283 amino acids

Sequence
(BLAST)

001: MEKEKKLTEG TSEIEEPIEV PLFQVPECYV YLIPPRKSAA SYRADEWNVN KWAWEGILKV LSKGEECIIK LEDKETGELY ARAFLRDGEP HPVEAVIDSS
101: RYFVLRIEEN IGGRLRHAFI GIGFRERPEA YDFQAALHDH QKYLNKKKTA EEMEQQYQKS SSVDYSLKEG ETLKLQIKNK PGGTIRSKFF EQGLNNLSLE
201: EKANRKDSTI LLKPPPPPPA PLSPVAADAR SPPVSPSKLS LEQSAETKDS ATAKEEPDTS ESAKEQGPQD VADDDFGDFQ AAG

Best Arabidopsis Sequence Match ( AT3G58600.1 )
(BLAST)

001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG

Arabidopsis Description

Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.