Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G220500.1 | Wheat | cytosol | 66.97 | 94.46 |
| TraesCS3D01G232100.1 | Wheat | cytosol | 66.74 | 94.14 |
| EES01071 | Sorghum | cytosol | 53.12 | 79.86 |
| Zm00001d044470_P006 | Maize | cytosol, nucleus, peroxisome | 52.89 | 79.24 |
| Os01t0614700-01 | Rice | nucleus | 55.2 | 77.1 |
| KRH27034 | Soybean | nucleus | 42.96 | 64.58 |
| Solyc07g053310.2.1 | Tomato | cytosol | 42.03 | 64.31 |
| VIT_12s0028g02380.t01 | Wine grape | nucleus | 42.49 | 64.11 |
| KRH22295 | Soybean | nucleus | 42.26 | 63.99 |
| PGSC0003DMT400052626 | Potato | nucleus | 41.57 | 63.6 |
| HORVU3Hr1G054050.3 | Barley | plastid | 60.28 | 62.29 |
| CDY00574 | Canola | nucleus | 41.8 | 61.36 |
| CDX88994 | Canola | nucleus | 41.57 | 61.02 |
| AT3G58600.1 | Thale cress | nucleus | 42.49 | 60.93 |
| Bra014563.1-P | Field mustard | nucleus | 41.34 | 60.68 |
| GSMUA_Achr6P21420_001 | Banana | nucleus | 24.71 | 53.23 |
| CDY49234 | Canola | nucleus | 29.33 | 52.7 |
| TraesCS1B01G171600.1 | Wheat | cytosol | 19.4 | 30.0 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G250800.1 | EnsemblPlantsGene:TraesCS3B01G250800 | Gene3D:2.30.29.30 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0006897 |
| GO:GO:0008150 | GO:GO:0016020 | InterPro:IPR011993 | InterPro:NECAP_PHear | InterPro:PH-like_dom_sf | PANTHER:PTHR12847 |
| PANTHER:PTHR12847:SF4 | PFAM:PF07933 | SEG:seg | SUPFAM:SSF50729 | TIGR:cd13228 | MapMan:35.1 |
Description
No Description!
Coordinates
chr3B:+:401027590..401030936
Molecular Weight (calculated)
47499.1 Da
IEP (calculated)
5.933
GRAVY (calculated)
-0.734
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MPNVELSGYP GDRCGRRGRG EGEDHTAARA LSHLTGREVT GHGWRRSTRP TLNTFPSPSY IPRPPQSLPS QPPKDPSSSH SVSPHSELGF NHCLSHPIPP
101: KSSPHPIRCS PAKRGLYPYL DSAAGAMASG SEQPQSETEP EAVELVLFQV AECYVYLIPP RKTAASYRAD EWNVNKWAWE GALKVASKGE ECVIKLEDKS
201: TGELYARAFL REGEPHPVEA VIDSSRYFVL RVEENIDGRQ RHAFIGLGFR ERTEAYDFQA ALHDHMKYLN KKKTAEEMVQ HYENTSSVDY SLKEGETLVL
301: QLKNKESGSK TKSAFFEQGL NKLSFNEKTN TKEATVSLKL PPPPPSPVSP TDSGVAMSPF KAEFPSQEQP GTGDAGAAAA PFKAEFPSQE EALDDTVEAR
401: AEAAPRNQPA AAEKSKQGSV DDEFDFGDFQ AAA
101: KSSPHPIRCS PAKRGLYPYL DSAAGAMASG SEQPQSETEP EAVELVLFQV AECYVYLIPP RKTAASYRAD EWNVNKWAWE GALKVASKGE ECVIKLEDKS
201: TGELYARAFL REGEPHPVEA VIDSSRYFVL RVEENIDGRQ RHAFIGLGFR ERTEAYDFQA ALHDHMKYLN KKKTAEEMVQ HYENTSSVDY SLKEGETLVL
301: QLKNKESGSK TKSAFFEQGL NKLSFNEKTN TKEATVSLKL PPPPPSPVSP TDSGVAMSPF KAEFPSQEQP GTGDAGAAAA PFKAEFPSQE EALDDTVEAR
401: AEAAPRNQPA AAEKSKQGSV DDEFDFGDFQ AAA
001: MDQASSSSTM EEDKKSSTDP VNVDDNEERE AIEIALFQVP ECYVYLIPPR KTAASYRADE WDVNKWAWEG ALKVVSKGEE CIIKLVDKTT GELYAQAFLR
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG
101: EGELHPVEAV IDSSRYFVLR VEEKIDGRVR HAFIGLGFRE RTEAYDFQAA LHDHMKYLNK KKTAEEMEQH YQNTSSVDYS LKEGETIVLQ LKNRSDKDSK
201: SKTVEKSLGN LSLEDKGKSI ETTIPSIILP PPPPGPLSPV TTAQKSPSSL PPSLSLQRSS EQQDLDTKRE EEEEEKKEDL KAKDGGVEDA PDDDFGDFQA
301: AG
Arabidopsis Description
Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:UniProtKB/TrEMBL;Acc:Q84WV7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.