Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G007700.1 | Wheat | cytosol | 98.61 | 98.61 |
| TraesCS2D01G016900.1 | Wheat | cytosol | 98.41 | 98.41 |
| TraesCSU01G007800.1 | Wheat | cytosol | 98.41 | 98.41 |
| TraesCS2D01G016500.1 | Wheat | cytosol | 42.26 | 96.82 |
| HORVU7Hr1G118120.1 | Barley | cytosol | 8.13 | 95.35 |
| Os06t0182500-02 | Rice | cytosol | 88.1 | 91.36 |
| KXG19479 | Sorghum | cytosol | 86.71 | 85.35 |
| Zm00001d035844_P004 | Maize | cytosol | 85.52 | 84.84 |
| GSMUA_Achr9P07650_001 | Banana | cytosol | 52.78 | 82.61 |
| GSMUA_Achr6P28210_001 | Banana | cytosol | 74.8 | 79.04 |
| HORVU0Hr1G028930.1 | Barley | cytosol | 19.44 | 62.03 |
| HORVU5Hr1G016350.3 | Barley | cytosol | 59.72 | 61.68 |
| GSMUA_Achr9P07640_001 | Banana | cytosol | 18.65 | 60.26 |
| HORVU4Hr1G060560.7 | Barley | cytosol | 52.98 | 52.46 |
| HORVU4Hr1G011730.4 | Barley | cytosol | 55.95 | 48.45 |
Protein Annotations
| MapMan:19.2.2.1.7 | Gene3D:2.10.110.10 | UniProt:A0A287GWX6 | InterPro:DA1-like | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | EnsemblPlantsGene:HORVU2Hr1G002700 | EnsemblPlants:HORVU2Hr1G002700.14 | InterPro:IPR001781 | InterPro:IPR003903 | PFAM:PF00412 |
| PFAM:PF12315 | ScanProsite:PS00478 | PFscan:PS50023 | PFscan:PS50330 | PANTHER:PTHR24209 | PANTHER:PTHR24209:SF11 |
| SMART:SM00132 | SMART:SM00726 | SUPFAM:SSF57716 | InterPro:UIM_dom | UniParc:UPI000B46A44E | InterPro:Znf_LIM |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:6177089..6270101
Molecular Weight (calculated)
57250.8 Da
IEP (calculated)
6.356
GRAVY (calculated)
-0.581
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWLTKFFRG STHNISEGRE QSKPAEETRW NEPSSSTVVI DALSEFDNED IDRAIALSLL EEEHRKPKET GKDLHLDEDE QLAIAIQESL NVESPPRAHE
101: NASPPRAREN SAHPRARENG SANSGNSYQQ LPFMFSSGFR TCAGCHNEIG HGRFLSCMGA VWHPECFCCH ACNQPIYDYE FSMSGNHPYH KTCYKERFHP
201: KCDVCKQFIP TNMNGLIEYR AHPFWLQKYC PSHEVDGTPR CCSCERMEPR ESRYVLLDDG RKLCLECLDS AVMDTNECQP LYLEIQEFYE GLNMKVEQQV
301: PLLLVERQAL NEAMEGEKTG HHHLPETRGL CLSEEQTVST ILRRPRMTGN KIMEMITEPY RLTRRCEVTA ILILYGLPRL LTGSILAHEM MHAWLRLKGY
401: RTLSPDIEEG ICQVLAHLWI ESEIMAGSGS NAASTSSSSS SSTSSKKGGR SQFERKLGDF FKHQIESDTS VAYGDGFRAG NRVVQQYGLK RTLEHIRLTG
501: TLPF
101: NASPPRAREN SAHPRARENG SANSGNSYQQ LPFMFSSGFR TCAGCHNEIG HGRFLSCMGA VWHPECFCCH ACNQPIYDYE FSMSGNHPYH KTCYKERFHP
201: KCDVCKQFIP TNMNGLIEYR AHPFWLQKYC PSHEVDGTPR CCSCERMEPR ESRYVLLDDG RKLCLECLDS AVMDTNECQP LYLEIQEFYE GLNMKVEQQV
301: PLLLVERQAL NEAMEGEKTG HHHLPETRGL CLSEEQTVST ILRRPRMTGN KIMEMITEPY RLTRRCEVTA ILILYGLPRL LTGSILAHEM MHAWLRLKGY
401: RTLSPDIEEG ICQVLAHLWI ESEIMAGSGS NAASTSSSSS SSTSSKKGGR SQFERKLGDF FKHQIESDTS VAYGDGFRAG NRVVQQYGLK RTLEHIRLTG
501: TLPF
001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
Arabidopsis Description
LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.