Factsheet for TraesCSU01G007800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G007700.1	Wheat	cytosol	99.01	99.01
TraesCS2D01G016900.1	Wheat	cytosol	98.81	98.81
HORVU2Hr1G002700.14	Barley	cytosol	98.41	98.41
TraesCS2D01G016500.1	Wheat	cytosol	42.46	97.27
Os06t0182500-02	Rice	cytosol	87.9	91.15
KXG19479	Sorghum	cytosol	86.31	84.96
Zm00001d035844_P004	Maize	cytosol	85.12	84.45
GSMUA_Achr9P07650_001	Banana	cytosol	52.58	82.3
GSMUA_Achr6P28210_001	Banana	cytosol	74.6	78.83
KRH33082	Soybean	cytosol	13.29	74.44
VIT_18s0001g11820.t01	Wine grape	cytosol	69.44	73.07
VIT_04s0023g01030.t01	Wine grape	cytosol	67.06	69.26
Solyc04g079840.2.1	Tomato	cytosol	66.47	68.93
PGSC0003DMT400043506	Potato	cytosol	66.07	68.52
Solyc02g089930.2.1	Tomato	cytosol	68.65	67.18
PGSC0003DMT400026022	Potato	cytosol	68.06	66.47
KRH05774	Soybean	cytosol	61.9	65.27
KRH15264	Soybean	cytosol	61.71	64.39
Bra016514.1-P	Field mustard	cytosol	56.94	62.12
KRH08326	Soybean	cytosol	64.68	61.63
CDY41035	Canola	cytosol, mitochondrion	61.9	61.54
CDY26685	Canola	cytosol, mitochondrion	61.71	61.34
KRH76891	Soybean	cytosol	65.48	60.44
CDX83776	Canola	cytosol	60.52	59.69
KRH28579	Soybean	cytosol	66.47	59.5
CDX96669	Canola	cytosol	60.32	59.49
Bra025725.1-P	Field mustard	cytosol, mitochondrion	61.9	59.2
GSMUA_Achr9P07640_001	Banana	cytosol	18.25	58.97
AT1G19270.1	Thale cress	cytosol, mitochondrion	61.71	58.46
AT4G36860.3	Thale cress	cytosol	66.07	57.71
KRH69970	Soybean	cytosol	64.48	56.42
CDX75603	Canola	mitochondrion	65.87	56.08
CDX69251	Canola	mitochondrion, nucleus	66.07	55.78
Bra011712.1-P	Field mustard	cytosol, mitochondrion	66.07	55.69
VIT_04s0023g01040.t01	Wine grape	plasma membrane	62.3	54.04
KRH26214	Soybean	cytosol	40.28	51.26
CDY18615	Canola	cytosol	35.12	50.43
Bra037160.1-P	Field mustard	cytosol	37.7	48.72
Solyc01g105210.2.1	Tomato	extracellular	11.11	46.28
CDX81385	Canola	cytosol	39.68	42.28
CDX81383	Canola	cytosol	37.9	40.04
AT5G66640.5	Thale cress	nucleus	36.71	38.38
CDY18616	Canola	nucleus	37.1	37.25
PGSC0003DMT400032779	Potato	cytosol	15.48	36.97
CDY47008	Canola	cytosol, nucleus, peroxisome	33.33	36.68
CDX81381	Canola	cytosol	36.71	35.99
PGSC0003DMT400032774	Potato	cytosol	20.24	35.79
CDX81382	Canola	cytosol	36.31	35.26
Solyc01g105200.2.1	Tomato	cytosol	11.31	35.19
Bra037159.1-P	Field mustard	cytosol	34.72	33.91
AT5G66610.2	Thale cress	cytosol	39.29	33.73
AT5G66620.1	Thale cress	cytosol	40.67	31.83
CDY45247	Canola	cytosol	37.5	30.63
CDY54205	Canola	cytosol	37.7	29.73
Solyc01g105180.2.1	Tomato	cytosol	22.22	28.79
VIT_18s0041g02180.t01	Wine grape	mitochondrion	39.29	28.7
CDY54206	Canola	cytosol	23.81	27.71
CDY54207	Canola	extracellular, plasma membrane	36.11	27.08
AT5G66630.1	Thale cress	cytosol	33.93	24.36
VIT_18s0041g02190.t01	Wine grape	cytosol	18.06	21.77

Protein Annotations

EnsemblPlants:TraesCSU01G007800.1	EnsemblPlantsGene:TraesCSU01G007800	Gene3D:2.10.110.10	InterPro:DA1-like	InterPro:IPR001781	InterPro:IPR003903
InterPro:UIM_dom	InterPro:Znf_LIM	PANTHER:PTHR24209	PANTHER:PTHR24209:SF11	PFAM:PF00412	PFAM:PF12315
PFscan:PS50023	PFscan:PS50330	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SMART:SM00726
SUPFAM:SSF57716	TIGR:cd09396	MapMan:19.2.2.1.7	:	:	:

Description

No Description!

Coordinates

chrUn:+:11739970..11748040

Molecular Weight (calculated)

57373.0 Da

IEP (calculated)

6.430

GRAVY (calculated)

-0.585

Length

504 amino acids

Sequence
(BLAST)

001: MGWLTKFFRG STHNISEGRE QSKPAEETRW NEPSTSTVVI DPLLEFDNED IDRAIALSLL EEEHRKPKET GKDLHLDEDE QLARAIQESL NVESPPRAHE
101: NTSPPRAREN SAHPRARENG SAIGGNSYQQ LPFMFSSGFR TCAGCHNEIG HGRFLSCMGA VWHPECFCCH ACNQPIYDYE FSMSGNHPYH KTCYKERFHP
201: KCDVCKQFIP TNMNGLIEYR AHPFWLQKYC PSHEVDGTPR CCSCERMEPR ESRYVLLDDG RKLCLECLDS AVMDTNECQP LYLEIQEFYE GLNMKVEQQV
301: PLLLVERQAL NEAMEGEKTG HHHLPETRGL CLSEEQTVST ILRRPRMTGN KIMEMITEPY RLTRRCEVTA ILILYGLPRL LTGSILAHEM MHAWLRLKGY
401: RTLTPDIEEG ICQVLAHLWI ESEIMAGSGS NAASTSSSSS SSTSSKKGGR SQFERKLGDF FKHQIESDTS VAYGDGFRAG NRVVQQYGLK RTLEHIRLTG
501: TLPF

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.