Factsheet for PGSC0003DMT400026022

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g089930.2.1	Tomato	cytosol	97.48	97.67
TraesCS2D01G016500.1	Wheat	cytosol	33.53	78.64
GSMUA_Achr9P07650_001	Banana	cytosol	48.26	77.33
VIT_04s0023g01030.t01	Wine grape	cytosol	71.12	75.2
GSMUA_Achr6P28210_001	Banana	cytosol	69.19	74.84
KRH33082	Soybean	cytosol	12.98	74.44
Os06t0182500-02	Rice	cytosol	67.83	72.02
PGSC0003DMT400043506	Potato	cytosol	65.5	69.55
Zm00001d035844_P004	Maize	cytosol	67.64	68.7
TraesCS2B01G007700.1	Wheat	cytosol	66.86	68.45
TraesCS2D01G016900.1	Wheat	cytosol	66.67	68.25
KXG19479	Sorghum	cytosol	67.64	68.16
TraesCSU01G007800.1	Wheat	cytosol	66.47	68.06
KRH08326	Soybean	cytosol	69.38	67.67
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	58.14	67.26
KRH76891	Soybean	cytosol	69.96	66.12
KRH28579	Soybean	cytosol	70.54	64.65
GSMUA_Achr4P23130_001	Banana	mitochondrion	58.53	63.05
Os03t0626600-01	Rice	plasma membrane	59.69	62.73
TraesCS5A01G060800.1	Wheat	cytosol	58.91	62.3
TraesCS5D01G072300.1	Wheat	nucleus	58.91	62.3
KRH69970	Soybean	cytosol	69.19	61.98
Os12t0596800-01	Rice	plasma membrane	58.14	61.73
EES16286	Sorghum	cytosol	59.88	60.83
AT4G36860.3	Thale cress	cytosol	67.25	60.14
TraesCS5B01G071300.1	Wheat	mitochondrion	58.91	58.91
CDX75603	Canola	mitochondrion	67.25	58.61
CDX69251	Canola	mitochondrion, nucleus	67.05	57.96
Bra011712.1-P	Field mustard	cytosol, mitochondrion	67.05	57.86
OQU91328	Sorghum	cytosol, mitochondrion	56.4	57.62
Zm00001d033297_P003	Maize	cytosol, mitochondrion	55.81	57.26
VIT_04s0023g01040.t01	Wine grape	plasma membrane	64.15	56.97
PGSC0003DMT400069927	Potato	cytosol	49.42	56.92
Zm00001d033289_P001	Maize	cytosol	11.05	55.34
KRH26214	Soybean	cytosol	42.44	55.3
GSMUA_Achr9P07640_001	Banana	cytosol	16.67	55.13
TraesCS4A01G245200.2	Wheat	cytosol	56.59	54.17
TraesCS4B01G070200.1	Wheat	cytosol	56.4	53.39
TraesCS4D01G069000.1	Wheat	cytosol	56.59	53.09
Zm00001d030953_P001	Maize	plastid	52.71	48.48
PGSC0003DMT400055872	Potato	cytosol	46.12	45.16
PGSC0003DMT400032779	Potato	cytosol	14.73	36.02
PGSC0003DMT400032774	Potato	cytosol	19.77	35.79

Protein Annotations

EntrezGene:102580107	MapMan:19.2.2.1.7	Gene3D:2.10.110.10	InterPro:DA1-like	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:IPR003903	UniProt:M1AMH6	PFAM:PF00412	PFAM:PF12315
EnsemblPlantsGene:PGSC0003DMG400010041	PGSC:PGSC0003DMG400010041	EnsemblPlants:PGSC0003DMT400026022	ScanProsite:PS00478	PFscan:PS50023	PFscan:PS50330
PANTHER:PTHR24209	PANTHER:PTHR24209:SF11	SMART:SM00132	SMART:SM00726	SUPFAM:SSF57716	InterPro:UIM_dom
UniParc:UPI000294BC4F	RefSeq:XP_006338269.1	RefSeq:XP_006338270.1	RefSeq:XP_006338271.1	RefSeq:XP_015161920.1	InterPro:Znf_LIM
SEG:seg	:	:	:	:	:

Description

LIM domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010041]

Coordinates

chr2:+:44796304..44800116

Molecular Weight (calculated)

57696.6 Da

IEP (calculated)

5.526

GRAVY (calculated)

-0.614

Length

516 amino acids

Sequence
(BLAST)

001: MGWLEKIFGG STHRISGGQY HGGYEGGQYH GGYDGGQYHS GHEGGQNHGG YEDSTTWDGP TTSVDELSDF DKEEIDRAIA LSLAEEDQKG KKVIESEPHL
101: EEDEALAKAL QESLNVESSP PPPPPPRYDY GSPFPPVSYS FPYGYRVCAG CNAEIGQGRY LSCMGAVWHP ECFRCHGCNQ PISDYEFSMS DNRPYHKSCY
201: KEQHHPKCDV CKNFIPTNPA GLIEYRAHPF WLQKYCPSHE TDGTPRCCSC ERMEPVDARY LILEDGRKLC LECLDSSIMD THECQPLYLE IQEFYEGLNM
301: KVEQQIPLLL VERQALNEAM EGEKNGHHHM PETRGLCLSE EQTISSISRR PRIGGYRILD MFTEPHRLIR QCEVTAILIL YGLPRLLTGS ILAHEMMHAW
401: LRLKGYPSLS PEVEEGICQV LAHMWLDSEI IAGSGSTSTS ASTSASSSSS SSPSTSSKKG KRSDFEKKLG DFFKHQIESD TSAAYGDGFR EGNKAVLKYG
501: LKTTLDHIRL TGTYPC

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.