Factsheet for Os03t0626600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0596800-01	Rice	plasma membrane	73.12	73.87
OQU91328	Sorghum	cytosol, mitochondrion	74.13	72.08
Zm00001d033297_P003	Maize	cytosol, mitochondrion	72.91	71.17
KRH33082	Soybean	cytosol	12.63	68.89
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	60.08	66.14
TraesCS4A01G245200.2	Wheat	cytosol	71.08	64.75
Zm00001d033289_P001	Maize	cytosol	13.44	64.08
TraesCS4B01G070200.1	Wheat	cytosol	70.47	63.49
TraesCS4D01G069000.1	Wheat	cytosol	70.47	62.91
VIT_18s0001g11820.t01	Wine grape	cytosol	61.1	62.63
VIT_04s0023g01030.t01	Wine grape	cytosol	61.71	62.09
Os06t0182500-02	Rice	cytosol	61.1	61.73
PGSC0003DMT400043506	Potato	cytosol	60.29	60.91
Solyc04g079840.2.1	Tomato	cytosol	60.08	60.7
PGSC0003DMT400026022	Potato	cytosol	62.73	59.69
Solyc02g089930.2.1	Tomato	cytosol	62.53	59.61
HORVU4Hr1G011730.4	Barley	cytosol	69.65	58.76
GSMUA_Achr4P23130_001	Banana	mitochondrion	57.23	58.66
KRH05774	Soybean	cytosol	56.21	57.74
KRH08326	Soybean	cytosol	61.91	57.47
KRH15264	Soybean	cytosol	55.8	56.73
KRH76891	Soybean	cytosol	62.12	55.86
Bra016514.1-P	Field mustard	cytosol	51.93	55.19
KRH28579	Soybean	cytosol	62.12	54.17
CDY41035	Canola	cytosol, mitochondrion	54.99	53.25
CDY26685	Canola	cytosol, mitochondrion	54.79	53.06
KRH69970	Soybean	cytosol	61.51	52.43
CDX96669	Canola	cytosol	53.97	51.86
CDX83776	Canola	cytosol	53.97	51.86
AT4G36860.3	Thale cress	cytosol	60.49	51.47
Bra025725.1-P	Field mustard	cytosol, mitochondrion	54.79	51.04
AT1G19270.1	Thale cress	cytosol, mitochondrion	54.99	50.75
CDX75603	Canola	mitochondrion	60.9	50.51
Bra011712.1-P	Field mustard	cytosol, mitochondrion	60.69	49.83
CDX69251	Canola	mitochondrion, nucleus	60.49	49.75
Os03t0267800-01	Rice	cytosol	49.9	48.9
VIT_04s0023g01040.t01	Wine grape	plasma membrane	56.62	47.85
CDY18615	Canola	cytosol	34.01	47.58
KRH26214	Soybean	cytosol	37.68	46.72
Bra037160.1-P	Field mustard	cytosol	36.25	45.64
Solyc01g105210.2.1	Tomato	extracellular	11.2	45.45
CDX81385	Canola	cytosol	37.88	39.32
CDX81383	Canola	cytosol	37.27	38.36
PGSC0003DMT400032774	Potato	cytosol	21.38	36.84
CDY18616	Canola	nucleus	37.27	36.45
CDY47008	Canola	cytosol, nucleus, peroxisome	33.6	36.03
Solyc01g105200.2.1	Tomato	cytosol	11.81	35.8
AT5G66640.5	Thale cress	nucleus	35.03	35.68
PGSC0003DMT400032779	Potato	cytosol	15.27	35.55
CDX81382	Canola	cytosol	36.66	34.68
CDX81381	Canola	cytosol	36.05	34.44
Bra037159.1-P	Field mustard	cytosol	35.44	33.72
AT5G66610.2	Thale cress	cytosol	39.51	33.05
AT5G66620.1	Thale cress	cytosol	39.71	30.28
CDY45247	Canola	cytosol	37.47	29.82
Solyc01g105180.2.1	Tomato	cytosol	22.61	28.53
CDY54205	Canola	cytosol	36.66	28.17
CDY54206	Canola	cytosol	23.83	27.02
CDY54207	Canola	extracellular, plasma membrane	36.05	26.34
VIT_18s0041g02180.t01	Wine grape	mitochondrion	36.66	26.09
AT5G66630.1	Thale cress	cytosol	35.23	24.64
VIT_18s0041g02190.t01	Wine grape	cytosol	16.9	19.86
Os12t0596900-01	Rice	extracellular, plasma membrane	10.39	17.65

Protein Annotations

MapMan:19.2.2.1.7	Gene3D:2.10.110.10	EntrezGene:4333500	ProteinID:AAW34242.1	ProteinID:ABF97715.1	ProteinID:BAF12616.2
ProteinID:BAS85348.1	InterPro:DA1-like	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781
InterPro:IPR003903	EnsemblPlantsGene:Os03g0626600	EnsemblPlants:Os03t0626600-01	PFAM:PF00412	PFAM:PF02809	PFAM:PF12315
ScanProsite:PS00478	PFscan:PS50023	PFscan:PS50330	PANTHER:PTHR24209	PANTHER:PTHR24209:SF12	UniProt:Q5KQN3
SMART:SM00132	SMART:SM00726	SUPFAM:SSF57716	InterPro:UIM_dom	UniParc:UPI00004B24C7	RefSeq:XP_015632721.1
RefSeq:XP_015632722.1	RefSeq:XP_015632724.1	RefSeq:XP_015632725.1	InterPro:Znf_LIM	SEG:seg	:

Description

Zinc finger, LIM-type domain containing protein. (Os03t0626600-01)

Coordinates

chr3:+:23855253..23861941

Molecular Weight (calculated)

55705.3 Da

IEP (calculated)

6.396

GRAVY (calculated)

-0.503

Length

491 amino acids

Sequence
(BLAST)

001: MGWLSKIFKG SVNRVSRGHY NGNTHEGHSA WHTKAYEHDS DHEDIDRAIA LSLSEEDQRK GKAVDEVDID HRLHEDEQLA RALQESLNDE PPRQNVPVKD
101: VHSESTPATF MPPYIFPSTG LRVCAGCKTP IGQGRFLSCM DSVWHPQCFR CFACDRPISE YEFAVHEGNP YHRSCYKELF HPKCDVCKNF IPTNKDGHIE
201: YRAHPFWMQK YCPAHETDRT PRCCSCERME PKDSKYITLD DGRKLCLECL NTSIMDTDEC QPLYIDIQEF YEGLNMKVEQ QIPLLLVERQ ALNEAMEAEK
301: TGHHLAETRG LCLSEEQIVR TILRRPVIGP GNKIVDMITG PYKLVRRCEV TAILILYGLP RLLTGSILAH EMMHAYLRLK GYQTLDPKVE EGICQVLAHM
401: WLESEITSGS SSIIASIAAS SSSSSSSSAP SSKKGVQTDF EKKLGEFFKH QIETDPSDVY GDGFRDGIKA VERYGLRKTL DHMKLTGVFP C

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.