CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75603	Canola	mitochondrion	96.65	97.47
Bra011712.1-P	Field mustard	cytosol, mitochondrion	96.98	96.82
AT4G36860.3	Thale cress	cytosol	84.25	87.17
KRH33082	Soybean	cytosol	12.06	80.0
TraesCS2D01G016500.1	Wheat	cytosol	28.31	76.82
GSMUA_Achr9P07650_001	Banana	cytosol	41.37	76.71
GSMUA_Achr6P28210_001	Banana	cytosol	56.95	71.28
Os06t0182500-02	Rice	cytosol	56.95	69.96
VIT_04s0023g01030.t01	Wine grape	cytosol	56.62	69.26
KRH08326	Soybean	cytosol	59.97	67.67
KRH76891	Soybean	cytosol	61.64	67.4
Solyc02g089930.2.1	Tomato	cytosol	57.96	67.18
PGSC0003DMT400026022	Potato	cytosol	57.96	67.05
Zm00001d035844_P004	Maize	cytosol	56.78	66.73
TraesCS2B01G007700.1	Wheat	cytosol	56.11	66.47
TraesCSU01G007800.1	Wheat	cytosol	55.78	66.07
TraesCS2D01G016900.1	Wheat	cytosol	55.78	66.07
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	49.25	65.92
KXG19479	Sorghum	cytosol	56.45	65.82
KRH28579	Soybean	cytosol	61.14	64.83
KRH69970	Soybean	cytosol	60.47	62.67
GSMUA_Achr4P23130_001	Banana	mitochondrion	50.08	62.42
TraesCS5D01G072300.1	Wheat	nucleus	50.08	61.27
TraesCS5A01G060800.1	Wheat	cytosol	50.08	61.27
Os03t0626600-01	Rice	plasma membrane	49.75	60.49
Os12t0596800-01	Rice	plasma membrane	48.91	60.08
OQU91328	Sorghum	cytosol, mitochondrion	50.25	59.41
EES16286	Sorghum	cytosol	50.25	59.06
Zm00001d033297_P003	Maize	cytosol, mitochondrion	49.08	58.25
TraesCS5B01G071300.1	Wheat	mitochondrion	50.08	57.95
CDY41035	Canola	cytosol, mitochondrion	48.58	57.2
CDY26685	Canola	cytosol, mitochondrion	48.41	57.0
KRH26214	Soybean	cytosol	37.69	56.82
CDX96669	Canola	cytosol	47.4	55.38
Zm00001d033289_P001	Maize	cytosol	9.55	55.34
CDX83776	Canola	cytosol	47.07	54.99
VIT_04s0023g01040.t01	Wine grape	plasma membrane	53.1	54.56
TraesCS4A01G245200.2	Wheat	cytosol	46.9	51.95
TraesCS4B01G070200.1	Wheat	cytosol	47.24	51.74
CDY18615	Canola	cytosol	30.32	51.57
TraesCS4D01G069000.1	Wheat	cytosol	47.07	51.09
CDY61785	Canola	plastid	41.71	48.26
GSMUA_Achr9P07640_001	Banana	cytosol	12.56	48.08
CDY07633	Canola	plastid	41.21	47.95
CDX74829	Canola	cytosol, plastid	41.88	47.44
CDY20486	Canola	cytosol, plastid	41.71	47.34
Zm00001d030953_P001	Maize	plastid	44.22	47.06
CDX81385	Canola	cytosol	34.0	42.92
CDX81383	Canola	cytosol	33.67	42.14
CDY18616	Canola	nucleus	32.16	38.25
CDY47008	Canola	cytosol, nucleus, peroxisome	29.15	37.99
CDX81382	Canola	cytosol	32.5	37.38
CDX81381	Canola	cytosol	32.16	37.35
CDY45247	Canola	cytosol	34.84	33.71
CDY54205	Canola	cytosol	33.67	31.46
CDY54207	Canola	extracellular, plasma membrane	33.0	29.32
CDY54206	Canola	cytosol	20.94	28.87

Protein Annotations

MapMan:19.2.2.1.7	Gene3D:2.10.110.10	GO:A0A078BWR3	EnsemblPlants:CDX69251	ProteinID:CDX69251	ProteinID:CDX69251.1
ncoils:Coil	InterPro:DA1-like	EnsemblPlantsGene:GSBRNA2T00131065001	InterPro:IPR001781	InterPro:IPR003903	PFAM:PF00412
PFAM:PF12315	ScanProsite:PS00478	PFscan:PS50023	PFscan:PS50330	PANTHER:PTHR24209	SMART:SM00132
SMART:SM00726	SUPFAM:SSF57716	InterPro:UIM_dom	UniParc:UPI0004EE83F7	InterPro:Znf_LIM	SEG:seg

Description

BnaC01g02020D

Coordinates

chrLK031789:-:3730055..3736153

Molecular Weight (calculated)

68041.5 Da

IEP (calculated)

5.253

GRAVY (calculated)

-0.686

Length

597 amino acids

Sequence
(BLAST)

001: MVKKRRTHLS LIGSRGNPGK GWPRARKRLL LVPMGWLTKI LKGSSHKYSD GQANRRYNRE DRSLLDTPRY SAEGSDFDKE EIECAIALSL SEQEHVIPQD
101: DKGKKVIEYK SETEEEDDED EDDEEEDDDE EHMRAQVEAE EEEEKKLAQA QVEEEEKRRA ESELEELEKQ LAKARVEDEE IRRAKAQLEE DEQLAKALQE
201: SMNVGSPPPG YDSGSVFPSY PFLVPSRICT GCRGEIGHGR FLSCMGGVWH PECFCCHACD KPIIDYEFSM SGNRPYHKLC YKEQHHPKCD VCHNFIPTNP
301: AGLIEYRAHP FWMQKYCPSH ERDGTPRCCS CERMEPKDTK YLILDDGRKL CLECLDSAIM DTNECQPLYL EIREFYEGLH MKVEQQIPML LVERSALNEA
401: MEGEKHGHHH LPETRGLCLS EEQTVTTVLR RPKIGAGYKL IDMITEPCRL VRRCEVTAIL ILYGLPRLLT GSILAHEMMH AWLRLNVGYP NLRPEVEEGI
501: CQVLAHMWLE SETYAGSTLI DIASSSSSSS SAAVAIASSK KGERSEFEKK LGEFFKHQIE SDSSSAYGDG FRQGNQAVLT HGLKRTLDHI RLTGTFP

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.