CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033297_P003	Maize	cytosol, mitochondrion	94.26	94.63
Os03t0626600-01	Rice	plasma membrane	72.08	74.13
EES16286	Sorghum	cytosol	70.69	70.28
KRH33082	Soybean	cytosol	12.48	70.0
Zm00001d033289_P001	Maize	cytosol	14.06	68.93
TraesCS4A01G245200.2	Wheat	cytosol	71.29	66.79
TraesCS4B01G070200.1	Wheat	cytosol	71.29	66.06
TraesCS4D01G069000.1	Wheat	cytosol	71.49	65.64
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	56.24	63.68
VIT_04s0023g01030.t01	Wine grape	cytosol	60.59	62.7
HORVU4Hr1G011730.4	Barley	cytosol	71.29	61.86
VIT_18s0001g11820.t01	Wine grape	cytosol	58.42	61.59
PGSC0003DMT400043506	Potato	cytosol	57.43	59.67
Solyc04g079840.2.1	Tomato	cytosol	57.23	59.47
KXG19479	Sorghum	cytosol	59.8	58.98
GSMUA_Achr4P23130_001	Banana	mitochondrion	55.45	58.46
KRH08326	Soybean	cytosol	60.0	57.28
Solyc02g089930.2.1	Tomato	cytosol	57.82	56.7
KRH76891	Soybean	cytosol	60.99	56.41
PGSC0003DMT400026022	Potato	cytosol	57.62	56.4
KRH05774	Soybean	cytosol	53.27	56.28
KRH15264	Soybean	cytosol	53.27	55.69
Bra016514.1-P	Field mustard	cytosol	50.49	55.19
CDY41035	Canola	cytosol, mitochondrion	54.85	54.64
KRH28579	Soybean	cytosol	60.59	54.35
CDY26685	Canola	cytosol, mitochondrion	54.46	54.24
CDX96669	Canola	cytosol	53.66	53.03
CDX83776	Canola	cytosol	53.47	52.84
Bra025725.1-P	Field mustard	cytosol, mitochondrion	54.46	52.18
KRH69970	Soybean	cytosol	59.21	51.91
AT1G19270.1	Thale cress	cytosol, mitochondrion	54.65	51.88
AT4G36860.3	Thale cress	cytosol	58.22	50.95
CDX75603	Canola	mitochondrion	59.21	50.51
CDX69251	Canola	mitochondrion, nucleus	59.41	50.25
Bra011712.1-P	Field mustard	cytosol, mitochondrion	59.01	49.83
Solyc01g105210.2.1	Tomato	extracellular	11.88	49.59
KXG39715	Sorghum	endoplasmic reticulum	48.91	48.62
VIT_04s0023g01040.t01	Wine grape	plasma membrane	55.25	48.02
KRH26214	Soybean	cytosol	36.63	46.72
CDY18615	Canola	cytosol	30.89	44.44
Bra037160.1-P	Field mustard	cytosol	33.86	43.85
CDX81383	Canola	cytosol	36.44	38.57
PGSC0003DMT400032774	Potato	cytosol	21.39	37.89
CDX81385	Canola	cytosol	35.05	37.42
CDY47008	Canola	cytosol, nucleus, peroxisome	32.48	35.81
PGSC0003DMT400032779	Potato	cytosol	14.85	35.55
AT5G66640.5	Thale cress	nucleus	33.86	35.48
Solyc01g105200.2.1	Tomato	cytosol	11.29	35.19
CDY18616	Canola	nucleus	33.86	34.06
CDX81381	Canola	cytosol	34.46	33.85
Bra037159.1-P	Field mustard	cytosol	33.66	32.95
CDX81382	Canola	cytosol	33.66	32.76
AT5G66610.2	Thale cress	cytosol	37.03	31.86
Solyc01g105180.2.1	Tomato	cytosol	23.37	30.33
CDY45247	Canola	cytosol	36.63	29.98
AT5G66620.1	Thale cress	cytosol	36.83	28.88
CDY54205	Canola	cytosol	36.04	28.48
CDY54206	Canola	cytosol	23.37	27.25
CDY54207	Canola	extracellular, plasma membrane	34.46	25.89
VIT_18s0041g02180.t01	Wine grape	mitochondrion	35.25	25.8
AT5G66630.1	Thale cress	cytosol	32.67	23.5
VIT_18s0041g02190.t01	Wine grape	cytosol	16.24	19.62

Protein Annotations

MapMan:19.2.2.1.7	Gene3D:2.10.110.10	UniProt:A0A1B6QJ84	InterPro:DA1-like	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR001781	InterPro:IPR003903	ProteinID:KXG37983.1	ProteinID:OQU91322.1	ProteinID:OQU91324.1
ProteinID:OQU91327.1	EnsemblPlants:OQU91328	ProteinID:OQU91328	ProteinID:OQU91328.1	PFAM:PF00412	PFAM:PF02809
PFAM:PF12315	ScanProsite:PS00478	PFscan:PS50023	PFscan:PS50330	PANTHER:PTHR24209	PANTHER:PTHR24209:SF12
SMART:SM00132	SMART:SM00726	EnsemblPlantsGene:SORBI_3001G162500	SUPFAM:SSF57716	InterPro:UIM_dom	UniParc:UPI0003C64A1D
InterPro:Znf_LIM	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:13403409..13411373

Molecular Weight (calculated)

56939.3 Da

IEP (calculated)

5.997

GRAVY (calculated)

-0.554

Length

505 amino acids

Sequence
(BLAST)

001: MGWLSKIFKG PVNRVSRGHY NGNSHEGYST QHTKSYGAHG NEDEDMDHAI ALSLSEEDQR KGKTIDTGHH LDEDEQLARA LQENTGHDLD EDEQLARALQ
101: ESMNDGPPRQ DIPIEDVHPE SAPASSLPSN IFPSSGLRVC AGCKSPIGRG RFLSCMDSVW HPECFRCYAC DRPISEYEFA VHENHAYHRP CYKECFHPKC
201: DVCSSFIPTN KSGLIEYRAH PFWMQKYCPS HENDGTPRCC SCERMEPKDS QYITLDDGRR LCLECLHTAI METNECQPLY IDIQEFYEGM NMKVEQQVPL
301: LLVERQALNE AMEAEKSVHH LPETRGLCLS EEQIVRTILK RPIIGPGNRI IDMITGPYKL VRRCEVTAIL ILYGLPRLLT GSILAHEMMH AYLRLKGYRT
401: LSPEVEEGIC QVLAHLWLES EITSGSGTMA TTSDASSSSS STSSSSKKGA KTEFEKRLGE FFKHQIETDS SVAYGDGFRA GMRAVERYGL RSTLDHIKMT
501: GSFPY

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.