Factsheet for VIT_18s0041g02190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_18s0041g02180.t01	Wine grape	mitochondrion	40.43	24.49
GSMUA_Achr9P07640_001	Banana	cytosol	8.61	23.08
VIT_18s0001g11820.t01	Wine grape	cytosol	24.16	21.09
VIT_04s0023g01030.t01	Wine grape	cytosol	23.92	20.49
Solyc04g079840.2.1	Tomato	cytosol	23.21	19.96
PGSC0003DMT400043506	Potato	cytosol	23.21	19.96
GSMUA_Achr6P28210_001	Banana	cytosol	22.73	19.92
KRH05774	Soybean	cytosol	22.25	19.46
Os06t0182500-02	Rice	cytosol	22.49	19.34
KRH15264	Soybean	cytosol	22.25	19.25
Zm00001d035844_P004	Maize	cytosol	22.01	18.11
TraesCSU01G007800.1	Wheat	cytosol	21.77	18.06
TraesCS2D01G016900.1	Wheat	cytosol	21.77	18.06
TraesCS2B01G007700.1	Wheat	cytosol	21.77	18.06
KXG19479	Sorghum	cytosol	22.01	17.97
CDY26685	Canola	cytosol, mitochondrion	21.77	17.95
CDY41035	Canola	cytosol, mitochondrion	21.77	17.95
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	19.14	17.94
CDX83776	Canola	cytosol	21.77	17.81
Bra016514.1-P	Field mustard	cytosol	19.62	17.75
CDX96669	Canola	cytosol	21.29	17.42
Os12t0596800-01	Rice	plasma membrane	20.1	17.28
Bra025725.1-P	Field mustard	cytosol, mitochondrion	21.77	17.27
EES16286	Sorghum	cytosol	20.57	16.93
AT1G19270.1	Thale cress	cytosol, mitochondrion	21.53	16.92
Os03t0626600-01	Rice	plasma membrane	19.86	16.9
TraesCS5D01G072300.1	Wheat	nucleus	19.62	16.8
TraesCS5A01G060800.1	Wheat	cytosol	19.62	16.8
GSMUA_Achr9P07650_001	Banana	cytosol	12.92	16.77
GSMUA_Achr4P23130_001	Banana	mitochondrion	18.9	16.49
OQU91328	Sorghum	cytosol, mitochondrion	19.62	16.24
VIT_04s0023g01040.t01	Wine grape	plasma membrane	22.25	16.01
Zm00001d033297_P003	Maize	cytosol, mitochondrion	19.14	15.9
TraesCS5B01G071300.1	Wheat	mitochondrion	19.62	15.89
Zm00001d030953_P001	Maize	plastid	21.29	15.86
TraesCS4A01G245200.2	Wheat	cytosol	20.1	15.58
TraesCS4D01G069000.1	Wheat	cytosol	20.33	15.45
TraesCS4B01G070200.1	Wheat	cytosol	20.1	15.41
VIT_13s0019g02430.t01	Wine grape	plastid	17.7	14.65
TraesCS2D01G016500.1	Wheat	cytosol	0.72	1.36
Zm00001d033289_P001	Maize	cytosol	0.24	0.97

Protein Annotations

MapMan:19.2.2.1.7	Gene3D:2.10.110.10	MapMan:26.8.2.1	Gene3D:3.40.50.300	ProteinID:CCB61622	ProteinID:CCB61622.1
UniProt:F6I442	EMBL:FN596744	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0043531
GO:GO:0046872	InterPro:IPR001781	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00412	PFAM:PF00931
PRINTS:PR00364	ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24209	PANTHER:PTHR24209:SF13	SMART:SM00132
SUPFAM:SSF52540	SUPFAM:SSF57716	UniParc:UPI0002109447	ArrayExpress:VIT_18s0041g02190	EnsemblPlantsGene:VIT_18s0041g02190	EnsemblPlants:VIT_18s0041g02190.t01
InterPro:Znf_LIM	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:27324161..27325815

Molecular Weight (calculated)

47893.0 Da

IEP (calculated)

8.446

GRAVY (calculated)

-0.314

Length

418 amino acids

Sequence
(BLAST)

001: MHFKCGRPES MLIKEIVGLI SNSMICRSSK DTELAINGKD VLTIGIWGMG GIGKTTLARA VFDHFSGQFD GCCFLENVRE DSEKYGLPYL YRKLFYQLLG
101: ASSSSTGFSS MKARLRSRRV LIVLDDVANL EQLEFLAGKN PQFGPGSRII ITTRGKHLLI TFGVNEIREA EKLSLKNAIR LFQQHHHKEV FMKLSSHVIE
201: YINVGSLLSR KSKLKWRSEL MDNESQSEEN EQLSRSIQED LIYTYPPPFG NESIYQAIPF PVLTGFKICA GCGTEIILRR YLKCIGKVWH PECFRCHACK
301: HPISDYEFFL SGESPYHKSC YKEKCRQKCD VCGHFFWANP ACLMEDREHP FWVQKYCPSH KHDGTPSCFS CERKEPWDTR YTTLKDGRKL CLECLTMQSW
401: TLMNTSPCIL MCKGSVKA

Best Arabidopsis Sequence Match ( AT1G19270.1 )
(BLAST)

001: MGWFNKIFKG SNQRLRVGNN KHNHNVYYDN YPTASHDDEP SAADTDADND EPHHTQEPST SEDNTSNDQE NEDIDRAIAL SLLEENQEQT SISGKYSMPV
101: DEDEQLARAL QESMVVGNSP RHKSGSTYDN GNAYGAGDLY GNGHMYGGGN VYANGDIYYP RPITFQMDFR ICAGCNMEIG HGRFLNCLNS LWHPECFRCY
201: GCSQPISEYE FSTSGNYPFH KACYRERYHP KCDVCSHFIP TNHAGLIEYR AHPFWVQKYC PSHEHDATPR CCSCERMEPR NTRYVELNDG RKLCLECLDS
301: AVMDTMQCQP LYLQIQNFYE GLNMKVEQEV PLLLVERQAL NEAREGEKNG HYHMPETRGL CLSEEQTVST VRKRSKHGTG KWAGNITEPY KLTRQCEVTA
401: ILILFGLPRL LTGSILAHEM MHAWMRLKGF RTLSQDVEEG ICQVMAHKWL DAELAAGSTN SNAASSSSSS QGLKKGPRSQ YERKLGEFFK HQIESDASPV
501: YGDGFRAGRL AVHKYGLRKT LEHIQMTGRF PV

Arabidopsis Description

DA1DA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WC71]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.