Factsheet for VIT_18s0041g02180.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P07650_001	Banana	cytosol	22.61	48.45
VIT_18s0001g11820.t01	Wine grape	cytosol	30.29	43.63
GSMUA_Achr6P28210_001	Banana	cytosol	29.71	42.98
TraesCS2D01G016500.1	Wheat	cytosol	13.33	41.82
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	26.52	41.03
Solyc04g079840.2.1	Tomato	cytosol	28.7	40.74
PGSC0003DMT400043506	Potato	cytosol	28.55	40.53
VIT_18s0041g02190.t01	Wine grape	cytosol	24.49	40.43
VIT_04s0023g01030.t01	Wine grape	cytosol	28.55	40.37
Os06t0182500-02	Rice	cytosol	28.41	40.33
KRH05774	Soybean	cytosol	27.83	40.17
KRH15264	Soybean	cytosol	27.54	39.34
TraesCSU01G007800.1	Wheat	cytosol	28.7	39.29
TraesCS2D01G016900.1	Wheat	cytosol	28.7	39.29
Bra016514.1-P	Field mustard	cytosol	26.23	39.18
TraesCS2B01G007700.1	Wheat	cytosol	28.55	39.09
Zm00001d035844_P004	Maize	cytosol	27.97	37.99
KXG19479	Sorghum	cytosol	27.83	37.5
GSMUA_Achr4P23130_001	Banana	mitochondrion	25.8	37.16
TraesCS5A01G060800.1	Wheat	cytosol	25.94	36.68
TraesCS5D01G072300.1	Wheat	nucleus	25.94	36.68
Os03t0626600-01	Rice	plasma membrane	26.09	36.66
CDX83776	Canola	cytosol	26.96	36.4
CDY41035	Canola	cytosol, mitochondrion	26.67	36.29
CDY26685	Canola	cytosol, mitochondrion	26.67	36.29
Os12t0596800-01	Rice	plasma membrane	25.51	36.21
CDX96669	Canola	cytosol	26.67	36.01
AT1G19270.1	Thale cress	cytosol, mitochondrion	27.68	35.9
OQU91328	Sorghum	cytosol, mitochondrion	25.8	35.25
Bra025725.1-P	Field mustard	cytosol, mitochondrion	26.67	34.91
EES16286	Sorghum	cytosol	25.65	34.84
TraesCS5B01G071300.1	Wheat	mitochondrion	25.94	34.69
Zm00001d033297_P003	Maize	cytosol, mitochondrion	25.22	34.59
VIT_04s0023g01040.t01	Wine grape	plasma membrane	27.68	32.87
TraesCS4A01G245200.2	Wheat	cytosol	25.51	32.65
TraesCS4D01G069000.1	Wheat	cytosol	25.8	32.36
TraesCS4B01G070200.1	Wheat	cytosol	25.51	32.29
VIT_13s0019g02430.t01	Wine grape	plastid	23.48	32.08
Zm00001d030953_P001	Maize	plastid	25.07	30.84
Zm00001d033289_P001	Maize	cytosol	4.49	30.1
GSMUA_Achr9P07640_001	Banana	cytosol	5.07	22.44

Protein Annotations

MapMan:19.2.2.1.7	Gene3D:2.10.110.10	Gene3D:3.40.50.300	ProteinID:CCB61623	ProteinID:CCB61623.1	InterPro:DA1-like
UniProt:F6I443	EMBL:FN596744	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0043531
GO:GO:0046872	InterPro:IPR001781	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00412	PFAM:PF00931
PFAM:PF12315	ScanProsite:PS00478	PFscan:PS50023	PANTHER:PTHR24209	PANTHER:PTHR24209:SF13	SMART:SM00132
SUPFAM:SSF52540	SUPFAM:SSF57716	UniParc:UPI0002109448	ArrayExpress:VIT_18s0041g02180	EnsemblPlantsGene:VIT_18s0041g02180	EnsemblPlants:VIT_18s0041g02180.t01
InterPro:Znf_LIM	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:-:27318985..27324143

Molecular Weight (calculated)

78103.1 Da

IEP (calculated)

7.966

GRAVY (calculated)

-0.269

Length

690 amino acids

Sequence
(BLAST)

001: MIKEPYKGVP GFKLTTFRIL HGLPRLLTGA ILAHLMMRVW LQLQGRRSLT QHAEGGICQV LAYMWLNTEL MSRYGSDIAS TSSSMTLPSP SRQGTRSKFE
101: RKFGEFLKYM IESDTSVYGD GFRAGYRSVL RHGLGRIVDH ILMTGRFPDT PDPEFRKLFS QLLGASSSST GFSSMKARLR SKRVLIVLDD VANSEQLEFL
201: AGKNPQFGPG SRIIITTRGK HLLITYGVNE IREAEELSLK TAIRLFQQYH HTEDVMTLSS YVIDYIKGFQ LFCQDAVGSL LFGKSKLECG SELIDNESQS
301: DEDEQLSRSI QKGFIYTYPP SLGNGSIYQA ILFPVSTGFK ICAGCGAEII QRRYLKCIGK VWHPECFRCH ACEQPISDYE FYLCRESPYH KSCYKEKCRQ
401: KCDVCGHFFW ANPAGPMEHR EHPFWVQKYC PSHEHDGTPS CVSCERKEPW GTRYTTLNDG RKLCLECLDH AIMDTHECQP LYLDVKNFCE SLNIVVEQQV
501: PLLLVERQSP SEATGAEEST VIDMIREPYK LVPGCKLTTF HVLHSLPRLL TGAILAHLMM RVWLRLRGHR ALTQHVEGGI CQVLAYMWLD TELMSGYGNN
601: IASTSSSMTL ASTSSRKGAR SKFERKLGEF LKYLIESDTS VHGDGFRDGY QSVLRHGLRT TVDHILMTGR FPYTPDPEFS LISCIGDQAS

Best Arabidopsis Sequence Match ( AT4G36860.3 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAVSE LYCFLVHFEL KIKGFLEFLI QEGSDFDKEE IECAIALSLS EQEHVIPQDD KGKKIIEYKS
101: ETEEDDDDDE DEDEEYMRAQ LEAAEEEERR VAQAQIEEEE KRRAEAQLEE TEKLLAKARL EEEEMRRSKA QLEEDELLAK ALQESMNVGS PPRYDPGNIL
201: QPYPFLIPSS HRICVGCQAE IGHGRFLSCM GGVWHPECFC CNACDKPIID YEFSMSGNRP YHKLCYKEQH HPKCDVCHNF IPTNPAGLIE YRAHPFWMQK
301: YCPSHERDGT PRCCSCERME PKDTKYLILD DGRKLCLECL DSAIMDTHEC QPLYLEIREF YEGLHMKVEQ QIPMLLVERS ALNEAMEGEK HGHHHLPETR
401: GLCLSEEQTV TTVLRRPRIG AGYKLIDMIT EPCRLIRRCE VTAILILYGL PRLLTGSILA HEMMHAWLRL NGYPNLRPEV EEGICQVLAH MWLESETYAG
501: STLVDIASSS SSAVVSASSK KGERSDFEKK LGEFFKHQIE SDSSSAYGDG FRQGNQAVLK HGLRRTLDHI RLTGTFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.