Factsheet for Zm00001d030953_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16286	Sorghum	cytosol	76.29	84.25
TraesCS5D01G072300.1	Wheat	nucleus	60.96	70.08
TraesCS5A01G060800.1	Wheat	cytosol	60.78	69.88
HORVU5Hr1G016350.3	Barley	cytosol	60.61	69.67
Os12t0596800-01	Rice	plasma membrane	59.36	68.52
TraesCS5B01G071300.1	Wheat	mitochondrion	60.96	66.28
Zm00001d033297_P003	Maize	cytosol, mitochondrion	54.37	60.64
VIT_04s0023g01030.t01	Wine grape	cytosol	49.02	56.35
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	44.03	55.38
VIT_18s0001g11820.t01	Wine grape	cytosol	46.52	54.49
PGSC0003DMT400043506	Potato	cytosol	46.17	53.29
Zm00001d035844_P004	Maize	cytosol	48.13	53.15
Solyc04g079840.2.1	Tomato	cytosol	45.99	53.09
PGSC0003DMT400026022	Potato	cytosol	48.48	52.71
Solyc02g089930.2.1	Tomato	cytosol	47.95	52.23
GSMUA_Achr4P23130_001	Banana	mitochondrion	44.56	52.19
KRH15264	Soybean	cytosol	44.74	51.97
KRH05774	Soybean	cytosol	44.03	51.67
KRH08326	Soybean	cytosol	47.77	50.66
KRH76891	Soybean	cytosol	47.95	49.27
Bra016514.1-P	Field mustard	cytosol	40.29	48.92
CDY41035	Canola	cytosol, mitochondrion	43.85	48.52
CDY26685	Canola	cytosol, mitochondrion	43.67	48.32
KRH28579	Soybean	cytosol	48.48	48.31
CDX96669	Canola	cytosol	43.14	47.36
CDX83776	Canola	cytosol	42.96	47.16
AT1G19270.1	Thale cress	cytosol, mitochondrion	44.21	46.62
Bra025725.1-P	Field mustard	cytosol, mitochondrion	43.67	46.49
KRH69970	Soybean	cytosol	47.42	46.18
AT4G36860.3	Thale cress	cytosol	46.88	45.58
CDX75603	Canola	mitochondrion	46.88	44.43
CDX69251	Canola	mitochondrion, nucleus	47.06	44.22
Bra011712.1-P	Field mustard	cytosol, mitochondrion	46.7	43.81
VIT_04s0023g01040.t01	Wine grape	plasma membrane	45.28	43.72
HORVU0Hr1G028930.1	Barley	cytosol	11.94	42.41
Solyc01g105210.2.1	Tomato	extracellular	9.09	42.15
Zm00001d028567_P001	Maize	mitochondrion	38.5	42.02
Zm00001d033289_P001	Maize	cytosol	7.49	40.78
CDY18615	Canola	cytosol	25.13	40.17
KRH26214	Soybean	cytosol	28.34	40.15
Bra037160.1-P	Field mustard	cytosol	27.09	38.97
Solyc01g105200.2.1	Tomato	cytosol	10.7	37.04
Zm00001d047837_P003	Maize	cytosol	33.51	36.65
CDX81385	Canola	cytosol	29.41	34.88
PGSC0003DMT400032774	Potato	cytosol	17.47	34.39
CDX81383	Canola	cytosol	28.16	33.12
CDY18616	Canola	nucleus	28.88	32.27
PGSC0003DMT400032779	Potato	cytosol	12.12	32.23
AT5G66640.5	Thale cress	nucleus	26.56	30.91
CDY47008	Canola	cytosol, nucleus, peroxisome	25.13	30.79
CDX81382	Canola	cytosol	27.81	30.06
CDX81381	Canola	cytosol	27.27	29.77
Bra037159.1-P	Field mustard	cytosol	27.09	29.46
KRH33082	Soybean	cytosol	4.63	28.89
AT5G66610.2	Thale cress	cytosol	29.77	28.45
Solyc01g105180.2.1	Tomato	cytosol	18.54	26.74
AT5G66620.1	Thale cress	cytosol	30.66	26.71
CDY45247	Canola	cytosol	28.88	26.26
CDY54205	Canola	cytosol	29.23	25.67
VIT_18s0041g02180.t01	Wine grape	mitochondrion	30.84	25.07
CDY54207	Canola	extracellular, plasma membrane	28.16	23.51
AT5G66630.1	Thale cress	cytosol	28.16	22.51
CDY54206	Canola	cytosol	16.58	21.48
VIT_18s0041g02190.t01	Wine grape	cytosol	15.86	21.29

Protein Annotations

EntrezGene:100281489	MapMan:19.2.2.1.7	Gene3D:2.10.110.10	UniProt:A0A1D6KF85	InterPro:DA1-like	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	InterPro:IPR003903	ProteinID:ONM01793.1	PFAM:PF00412
PFAM:PF12315	ScanProsite:PS00478	PFscan:PS50023	PFscan:PS50330	PANTHER:PTHR24209	PANTHER:PTHR24209:SF11
SMART:SM00132	SMART:SM00726	SUPFAM:SSF57716	InterPro:UIM_dom	UniParc:UPI0008452BB7	EnsemblPlantsGene:Zm00001d030953
EnsemblPlants:Zm00001d030953_P001	EnsemblPlants:Zm00001d030953_T001	InterPro:Znf_LIM	SEG:seg	:	:

Description

LIM-transcription factor 4Zinc ion binding protein

Coordinates

chr1:+:168697730..168709504

Molecular Weight (calculated)

63738.1 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.605

Length

561 amino acids

Sequence
(BLAST)

001: MCMTKSLDKA KCWGNRTAAL NASAALVRPT RSVRRRSRFI YPTANKVNGL LGSWASRHKD SFSDLKQLPD CRENKLSNIE IIVADISKFE IMSWLNKIFK
101: GSVNRVSRGH YDGDWHEGHS SDHTRDTYDD SDNEDIDRAI ALSLAEEDHN KGKSVAIDTD YNLEEDEQLA RALQESLNAE SPPRQNVPIE DVPVPQWNIP
201: VERVPPRQYV PANEPTPHVY PRGGSRICAG CQNPIGHGRF LSCMDSVWHP QCFRCFACNK PISEYEFAMH DDQPYHKSCY KEFFHPKCDV CNNFIPTNRD
301: GLIEYRAHPF WMQKYCPSHE DDGTPRCCSC ERMEPREIKY ITLDDGRKLC LECLNSAVMD SPECQHLYMD IQEFFEGLNM KVEQQIPLLL VERQALNEAL
401: EAEKNVSGMN WGTTYRKPEV YAFLRSKLLE RLQTGSILAH EMMHAYLRLK GFRNLSIEVE EGICQVLSHL WLESEIIAGS SSNVASSSEA SSSSSSSAPT
501: SSKKGAKTEF EKKLGAFIKH QIETDSSEAY GGGFRAGYPA VERYGLKRTL DHMKLTGSFP Y

Best Arabidopsis Sequence Match ( AT1G19270.1 )
(BLAST)

001: MGWFNKIFKG SNQRLRVGNN KHNHNVYYDN YPTASHDDEP SAADTDADND EPHHTQEPST SEDNTSNDQE NEDIDRAIAL SLLEENQEQT SISGKYSMPV
101: DEDEQLARAL QESMVVGNSP RHKSGSTYDN GNAYGAGDLY GNGHMYGGGN VYANGDIYYP RPITFQMDFR ICAGCNMEIG HGRFLNCLNS LWHPECFRCY
201: GCSQPISEYE FSTSGNYPFH KACYRERYHP KCDVCSHFIP TNHAGLIEYR AHPFWVQKYC PSHEHDATPR CCSCERMEPR NTRYVELNDG RKLCLECLDS
301: AVMDTMQCQP LYLQIQNFYE GLNMKVEQEV PLLLVERQAL NEAREGEKNG HYHMPETRGL CLSEEQTVST VRKRSKHGTG KWAGNITEPY KLTRQCEVTA
401: ILILFGLPRL LTGSILAHEM MHAWMRLKGF RTLSQDVEEG ICQVMAHKWL DAELAAGSTN SNAASSSSSS QGLKKGPRSQ YERKLGEFFK HQIESDASPV
501: YGDGFRAGRL AVHKYGLRKT LEHIQMTGRF PV

Arabidopsis Description

DA1DA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WC71]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.