Factsheet for PGSC0003DMT400032774

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 3
plastid 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105210.2.1	Tomato	extracellular	41.05	96.69
PGSC0003DMT400032779	Potato	cytosol	50.53	68.25
Solyc01g105200.2.1	Tomato	cytosol	37.19	65.43
GSMUA_Achr9P07650_001	Banana	cytosol	36.84	32.61
TraesCS2D01G016500.1	Wheat	cytosol	24.91	32.27
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	37.54	23.99
GSMUA_Achr6P28210_001	Banana	cytosol	37.89	22.64
GSMUA_Achr4P23130_001	Banana	mitochondrion	36.49	21.71
PGSC0003DMT400043506	Potato	cytosol	36.49	21.4
OQU91328	Sorghum	cytosol, mitochondrion	37.89	21.39
Os03t0626600-01	Rice	plasma membrane	36.84	21.38
Zm00001d033297_P003	Maize	cytosol, mitochondrion	37.54	21.27
Os12t0596800-01	Rice	plasma membrane	36.14	21.19
Os06t0182500-02	Rice	cytosol	36.14	21.19
TraesCS5A01G060800.1	Wheat	cytosol	36.14	21.11
TraesCS5D01G072300.1	Wheat	nucleus	36.14	21.11
PGSC0003DMT400069927	Potato	cytosol	32.98	20.98
EES16286	Sorghum	cytosol	37.19	20.87
Bra037160.1-P	Field mustard	cytosol	28.42	20.77
TraesCS2B01G007700.1	Wheat	cytosol	36.14	20.44
TraesCS4A01G245200.2	Wheat	cytosol	38.6	20.41
TraesCS2D01G016900.1	Wheat	cytosol	35.79	20.24
TraesCSU01G007800.1	Wheat	cytosol	35.79	20.24
TraesCS4D01G069000.1	Wheat	cytosol	38.95	20.18
Zm00001d035844_P004	Maize	cytosol	35.79	20.08
TraesCS4B01G070200.1	Wheat	cytosol	38.25	20.0
PGSC0003DMT400026022	Potato	cytosol	35.79	19.77
TraesCS5B01G071300.1	Wheat	mitochondrion	35.79	19.77
KXG19479	Sorghum	cytosol	35.44	19.73
CDY18615	Canola	cytosol	23.86	19.37
PGSC0003DMT400055872	Potato	cytosol	34.74	18.79
Zm00001d033289_P001	Maize	cytosol	6.67	18.45
CDX81383	Canola	cytosol	29.82	17.82
Zm00001d030953_P001	Maize	plastid	34.39	17.47
CDX81385	Canola	cytosol	28.42	17.12
AT5G66640.5	Thale cress	nucleus	28.77	17.01
CDY18616	Canola	nucleus	28.42	16.14
AT5G66610.2	Thale cress	cytosol	32.63	15.84
Bra037159.1-P	Field mustard	cytosol	28.07	15.5
CDY47008	Canola	cytosol, nucleus, peroxisome	24.56	15.28
CDX81381	Canola	cytosol	27.37	15.18
CDY45247	Canola	cytosol	31.93	14.75
CDY54207	Canola	extracellular, plasma membrane	34.39	14.58
CDY54205	Canola	cytosol	31.93	14.24
CDX81382	Canola	cytosol	25.61	14.07
AT5G66620.1	Thale cress	cytosol	30.88	13.66
CDY54206	Canola	cytosol	20.0	13.16
AT5G66630.1	Thale cress	cytosol	31.23	12.68
HORVU7Hr1G118120.1	Barley	cytosol	0.35	2.33
GSMUA_Achr9P07640_001	Banana	cytosol	0.7	1.28

Protein Annotations

EnsemblPlants:PGSC0003DMT400032774	EnsemblPlantsGene:PGSC0003DMG400012583	InterPro:DA1-like	PANTHER:PTHR24209	PANTHER:PTHR24209:SF13	PFAM:PF12315
PGSC:PGSC0003DMG400012583	SEG:seg	UniParc:UPI0002962112	UniProt:M1AY06	MapMan:19.2.2.1.7	:

Description

LIM domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012583]

Coordinates

chr1:+:81911419..81917448

Molecular Weight (calculated)

32637.6 Da

IEP (calculated)

8.013

GRAVY (calculated)

-0.374

Length

285 amino acids

Sequence
(BLAST)

001: MVETFQGVKS ICPCIKIRSD WSRCTYWGQT YCEKHTSDGT PQCCSCSRLK IGDLKYITLN DGRKLCPDCH YTAVTDPGVC KPLLDEVHRF FKGMDMKIRY
101: YIPILLVDEK EMIKNVQKTS LGLTVYDKSE LEAVTYVSRS IQKGEKVKVV KEVEHLVEGR KVKAMLLLYG LPKLDLGATL AHEMMHAWMK IEGYEGLSLN
201: IAEGICEVIA HKWLEWQSFT GDENIKGTSE KAQFLRNLKE FLKDGIEKNH SEAYGHGFRE AKWAVERYGL RCTLDHISRT GKLPE

Best Arabidopsis Sequence Match ( AT1G19270.1 )
(BLAST)

001: MGWFNKIFKG SNQRLRVGNN KHNHNVYYDN YPTASHDDEP SAADTDADND EPHHTQEPST SEDNTSNDQE NEDIDRAIAL SLLEENQEQT SISGKYSMPV
101: DEDEQLARAL QESMVVGNSP RHKSGSTYDN GNAYGAGDLY GNGHMYGGGN VYANGDIYYP RPITFQMDFR ICAGCNMEIG HGRFLNCLNS LWHPECFRCY
201: GCSQPISEYE FSTSGNYPFH KACYRERYHP KCDVCSHFIP TNHAGLIEYR AHPFWVQKYC PSHEHDATPR CCSCERMEPR NTRYVELNDG RKLCLECLDS
301: AVMDTMQCQP LYLQIQNFYE GLNMKVEQEV PLLLVERQAL NEAREGEKNG HYHMPETRGL CLSEEQTVST VRKRSKHGTG KWAGNITEPY KLTRQCEVTA
401: ILILFGLPRL LTGSILAHEM MHAWMRLKGF RTLSQDVEEG ICQVMAHKWL DAELAAGSTN SNAASSSSSS QGLKKGPRSQ YERKLGEFFK HQIESDASPV
501: YGDGFRAGRL AVHKYGLRKT LEHIQMTGRF PV

Arabidopsis Description

DA1DA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WC71]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.