Factsheet for TraesCS5D01G072300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G060800.1	Wheat	cytosol	98.98	98.98
HORVU5Hr1G016350.3	Barley	cytosol	97.13	97.13
TraesCS5B01G071300.1	Wheat	mitochondrion	98.36	93.02
Os12t0596800-01	Rice	plasma membrane	80.94	81.28
EES16286	Sorghum	cytosol	78.07	75.0
HORVU0Hr1G028930.1	Barley	cytosol	24.18	74.68
TraesCS2D01G016500.1	Wheat	cytosol	33.2	73.64
KRH33082	Soybean	cytosol	12.7	68.89
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	59.22	64.8
VIT_04s0023g01030.t01	Wine grape	cytosol	63.52	63.52
VIT_18s0001g11820.t01	Wine grape	cytosol	60.25	61.38
PGSC0003DMT400043506	Potato	cytosol	60.86	61.11
Zm00001d030953_P001	Maize	plastid	70.08	60.96
Solyc04g079840.2.1	Tomato	cytosol	60.66	60.91
TraesCS2D01G016900.1	Wheat	cytosol	61.68	59.72
Solyc02g089930.2.1	Tomato	cytosol	62.5	59.22
TraesCS4D01G069000.1	Wheat	cytosol	66.6	59.09
PGSC0003DMT400026022	Potato	cytosol	62.3	58.91
GSMUA_Achr4P23130_001	Banana	mitochondrion	56.15	57.2
KRH08326	Soybean	cytosol	61.07	56.33
KRH15264	Soybean	cytosol	54.3	54.87
KRH05774	Soybean	cytosol	53.69	54.81
Bra016514.1-P	Field mustard	cytosol	51.23	54.11
KRH76891	Soybean	cytosol	60.25	53.85
CDY26685	Canola	cytosol, mitochondrion	54.3	52.27
CDY41035	Canola	cytosol, mitochondrion	54.3	52.27
KRH28579	Soybean	cytosol	60.25	52.22
KRH69970	Soybean	cytosol	61.27	51.91
CDX96669	Canola	cytosol	53.07	50.68
CDX83776	Canola	cytosol	53.07	50.68
AT4G36860.3	Thale cress	cytosol	59.84	50.61
CDX75603	Canola	mitochondrion	61.07	50.34
Bra025725.1-P	Field mustard	cytosol, mitochondrion	54.3	50.28
CDX69251	Canola	mitochondrion, nucleus	61.27	50.08
Bra011712.1-P	Field mustard	cytosol, mitochondrion	60.86	49.67
AT1G19270.1	Thale cress	cytosol, mitochondrion	54.1	49.62
VIT_04s0023g01040.t01	Wine grape	plasma membrane	58.61	49.23
TraesCS4D01G211600.2	Wheat	endoplasmic reticulum	49.39	47.16
KRH26214	Soybean	cytosol	37.3	45.96
CDY18615	Canola	cytosol	32.58	45.3
Solyc01g105210.2.1	Tomato	extracellular	11.07	44.63
Bra037160.1-P	Field mustard	cytosol	34.63	43.33
CDX81383	Canola	cytosol	38.11	38.99
CDX81385	Canola	cytosol	36.68	37.84
PGSC0003DMT400032774	Potato	cytosol	21.11	36.14
CDY18616	Canola	nucleus	36.68	35.66
AT5G66640.5	Thale cress	nucleus	34.84	35.27
Solyc01g105200.2.1	Tomato	cytosol	11.68	35.19
CDY47008	Canola	cytosol, nucleus, peroxisome	32.38	34.5
CDX81381	Canola	cytosol	36.07	34.24
PGSC0003DMT400032779	Potato	cytosol	14.75	34.12
CDX81382	Canola	cytosol	34.84	32.76
Bra037159.1-P	Field mustard	cytosol	34.63	32.75
AT5G66610.2	Thale cress	cytosol	38.52	32.03
AT5G66620.1	Thale cress	cytosol	40.78	30.9
CDY45247	Canola	cytosol	38.32	30.31
CDY54205	Canola	cytosol	38.73	29.58
Solyc01g105180.2.1	Tomato	cytosol	22.54	28.28
CDY54206	Canola	cytosol	25.0	28.18
CDY54207	Canola	extracellular, plasma membrane	36.07	26.19
VIT_18s0041g02180.t01	Wine grape	mitochondrion	36.68	25.94
AT5G66630.1	Thale cress	cytosol	36.89	25.64
VIT_18s0041g02190.t01	Wine grape	cytosol	16.8	19.62

Protein Annotations

EnsemblPlants:TraesCS5D01G072300.1	EnsemblPlantsGene:TraesCS5D01G072300	Gene3D:2.10.110.10	InterPro:DA1-like	InterPro:IPR001781	InterPro:IPR003903
InterPro:UIM_dom	InterPro:Znf_LIM	PANTHER:PTHR24209	PANTHER:PTHR24209:SF11	PFAM:PF00412	PFAM:PF02809
PFAM:PF12315	PFscan:PS50023	PFscan:PS50330	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SMART:SM00726	SUPFAM:SSF57716	TIGR:cd09396	MapMan:19.2.2.1.7	:	:

Description

No Description!

Coordinates

chr5D:-:71900390..71905691

Molecular Weight (calculated)

54958.9 Da

IEP (calculated)

5.965

GRAVY (calculated)

-0.558

Length

488 amino acids

Sequence
(BLAST)

001: MGWLNKIFKG SVNRVSRGHY DGHWHEGNQS EHTRDAYDES DSEDIARAIA LSLAEQDPNK GKAIDPDYSL EEDEQLARAL QESLNTESPP HQNAPVENVP
101: TESIPAREPH QHVLPSSGFR TCAGCRKPIG HGRFLSCMDE VWHPQCFKCY ACNKPISEYE FAMHEDQPYH KSCYKDFFHP KCDVCKNFIP TNQNGLIEYR
201: AHPFWMQKYC PSHEDDGTPR CCSCERMEPT DIKYITLDDG RKLCLECLTS ATMDSPECQH LYMDIQEFFE GLNMKVEQQV PLLLVERQAL NEALEAEKSG
301: HHLPETRGLC LSEEQIVRTI LKRPTIGPGN RIMDMITGPY KLVRRCEVTA ILILYGLPRL QTGSILAHEM MHAYLRLKGY RSLSPQVEEG ICQVLSHLWL
401: ESEIIAGASG NAASSSASSS SSSAAPTSSK KGAKTEFEKK LGAFIKNQIE TDSSVEYGDG FRAGIQAVEQ YGLRSTLDHM RLTGSFPY

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.