Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G060800.1 | Wheat | cytosol | 98.16 | 98.16 |
| TraesCS5D01G072300.1 | Wheat | nucleus | 97.13 | 97.13 |
| TraesCS5B01G071300.1 | Wheat | mitochondrion | 97.34 | 92.05 |
| Os12t0596800-01 | Rice | plasma membrane | 82.17 | 82.51 |
| HORVU0Hr1G028930.1 | Barley | cytosol | 24.39 | 75.32 |
| EES16286 | Sorghum | cytosol | 77.25 | 74.21 |
| HORVU7Hr1G118120.1 | Barley | cytosol | 6.15 | 69.77 |
| GSMUA_Achr7P00700_001 | Banana | endoplasmic reticulum | 59.43 | 65.02 |
| Zm00001d030953_P001 | Maize | plastid | 69.67 | 60.61 |
| HORVU2Hr1G002700.14 | Barley | cytosol | 61.68 | 59.72 |
| GSMUA_Achr4P23130_001 | Banana | mitochondrion | 56.76 | 57.83 |
| HORVU4Hr1G011730.4 | Barley | cytosol | 66.39 | 55.67 |
| HORVU4Hr1G060560.7 | Barley | cytosol | 49.18 | 47.15 |
Protein Annotations
| MapMan:19.2.2.1.7 | Gene3D:2.10.110.10 | InterPro:DA1-like | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| EnsemblPlantsGene:HORVU5Hr1G016350 | EnsemblPlants:HORVU5Hr1G016350.3 | InterPro:IPR001781 | InterPro:IPR003903 | UniProt:M0XEZ7 | PFAM:PF00412 |
| PFAM:PF02809 | PFAM:PF12315 | ScanProsite:PS00478 | PFscan:PS50023 | PFscan:PS50330 | PANTHER:PTHR24209 |
| PANTHER:PTHR24209:SF11 | SMART:SM00132 | SMART:SM00726 | SUPFAM:SSF57716 | InterPro:UIM_dom | UniParc:UPI000294BCF3 |
| InterPro:Znf_LIM | SEG:seg | : | : | : | : |
Description
Predicted protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0XEZ7]
Coordinates
chrchr5H:-:61092386..61098161
Molecular Weight (calculated)
54974.1 Da
IEP (calculated)
6.109
GRAVY (calculated)
-0.564
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWLNKIFKG SVNRVSRGHY DGHWHEGNPS EHTRDAYNES DSEDIARAIA LSLAEQDPNK GKAIDPDYSL EEDEQLARAL QESLNTESPP RQNAPVENVP
101: SESIPAREPH QPVFPSSGFR TCAGCRKPIG HGRFLSCMDE VWHPQCFKCY ACNKPISEYE FAMHEDQPYH KSCYKDFFHP KCDVCKNFIP TNKNGLIEYR
201: AHPFWMQKYC PSHEDDGTPR CCSCERMEPT DIKYITLDDG RKLCLECLTS ATMDSPECQH LYMDIQEFFE GLNMKVEQQV PLLLVERQAL NEALEAEKSG
301: HHLPETRGLC LSEEQIVKTI LRRPTIGPGN RIMDMITGPY KLVRRCEVTA ILILYGLPRL QTGSILAHEM MHAYLRLKGY RSLSPQVEEG ICQVLSHMWL
401: ESEIIAGASG NTASTSASSS SSSAAPTTSK KGAKTEFEKK LGAFIKNQIE TDSSVEYGDG FRAGIQAVEQ YGLRSTLDHM KLTGSFPY
101: SESIPAREPH QPVFPSSGFR TCAGCRKPIG HGRFLSCMDE VWHPQCFKCY ACNKPISEYE FAMHEDQPYH KSCYKDFFHP KCDVCKNFIP TNKNGLIEYR
201: AHPFWMQKYC PSHEDDGTPR CCSCERMEPT DIKYITLDDG RKLCLECLTS ATMDSPECQH LYMDIQEFFE GLNMKVEQQV PLLLVERQAL NEALEAEKSG
301: HHLPETRGLC LSEEQIVKTI LRRPTIGPGN RIMDMITGPY KLVRRCEVTA ILILYGLPRL QTGSILAHEM MHAYLRLKGY RSLSPQVEEG ICQVLSHMWL
401: ESEIIAGASG NTASTSASSS SSSAAPTTSK KGAKTEFEKK LGAFIKNQIE TDSSVEYGDG FRAGIQAVEQ YGLRSTLDHM KLTGSFPY
001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
Arabidopsis Description
LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.