Factsheet for Os12t0596800-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G016350.3	Barley	cytosol	82.51	82.17
TraesCS5A01G060800.1	Wheat	cytosol	81.69	81.35
TraesCS5D01G072300.1	Wheat	nucleus	81.28	80.94
TraesCS5B01G071300.1	Wheat	mitochondrion	81.89	77.13
EES16286	Sorghum	cytosol	77.16	73.82
Os03t0626600-01	Rice	plasma membrane	73.87	73.12
KRH33082	Soybean	cytosol	12.96	70.0
HORVU0Hr1G028930.1	Barley	cytosol	22.43	68.99
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	60.7	66.14
VIT_04s0023g01030.t01	Wine grape	cytosol	62.96	62.7
Os06t0182500-02	Rice	cytosol	61.52	61.52
VIT_18s0001g11820.t01	Wine grape	cytosol	59.88	60.75
PGSC0003DMT400043506	Potato	cytosol	60.29	60.29
Solyc04g079840.2.1	Tomato	cytosol	60.08	60.08
Zm00001d030953_P001	Maize	plastid	68.52	59.36
GSMUA_Achr4P23130_001	Banana	mitochondrion	57.82	58.66
Solyc02g089930.2.1	Tomato	cytosol	62.14	58.64
PGSC0003DMT400026022	Potato	cytosol	61.73	58.14
KRH08326	Soybean	cytosol	61.73	56.71
KRH05774	Soybean	cytosol	55.35	56.28
KRH15264	Soybean	cytosol	55.56	55.9
Bra016514.1-P	Field mustard	cytosol	52.67	55.41
KRH76891	Soybean	cytosol	61.93	55.13
KRH28579	Soybean	cytosol	61.93	53.46
CDY26685	Canola	cytosol, mitochondrion	54.73	52.47
CDY41035	Canola	cytosol, mitochondrion	54.73	52.47
KRH69970	Soybean	cytosol	61.32	51.74
CDX83776	Canola	cytosol	53.91	51.27
CDX96669	Canola	cytosol	53.91	51.27
Bra025725.1-P	Field mustard	cytosol, mitochondrion	54.73	50.47
AT1G19270.1	Thale cress	cytosol, mitochondrion	54.94	50.19
AT4G36860.3	Thale cress	cytosol	59.47	50.09
CDX75603	Canola	mitochondrion	59.88	49.16
CDX69251	Canola	mitochondrion, nucleus	60.08	48.91
Bra011712.1-P	Field mustard	cytosol, mitochondrion	59.67	48.49
Os03t0267800-01	Rice	cytosol	49.79	48.3
VIT_04s0023g01040.t01	Wine grape	plasma membrane	57.41	48.02
Solyc01g105210.2.1	Tomato	extracellular	11.52	46.28
KRH26214	Soybean	cytosol	37.45	45.96
CDY18615	Canola	cytosol	32.51	45.01
Bra037160.1-P	Field mustard	cytosol	34.77	43.33
CDX81385	Canola	cytosol	37.45	38.48
CDX81383	Canola	cytosol	37.65	38.36
Solyc01g105200.2.1	Tomato	cytosol	12.14	36.42
PGSC0003DMT400032774	Potato	cytosol	21.19	36.14
PGSC0003DMT400032779	Potato	cytosol	15.43	35.55
CDY18616	Canola	nucleus	36.42	35.26
AT5G66640.5	Thale cress	nucleus	34.77	35.06
CDX81381	Canola	cytosol	36.83	34.82
CDY47008	Canola	cytosol, nucleus, peroxisome	32.72	34.72
CDX81382	Canola	cytosol	35.6	33.33
Bra037159.1-P	Field mustard	cytosol	34.98	32.95
AT5G66610.2	Thale cress	cytosol	37.86	31.35
CDY45247	Canola	cytosol	38.48	30.31
AT5G66620.1	Thale cress	cytosol	39.3	29.66
CDY54205	Canola	cytosol	38.48	29.26
Solyc01g105180.2.1	Tomato	cytosol	23.05	28.79
CDY54206	Canola	cytosol	24.28	27.25
CDY54207	Canola	extracellular, plasma membrane	36.63	26.49
VIT_18s0041g02180.t01	Wine grape	mitochondrion	36.21	25.51
AT5G66630.1	Thale cress	cytosol	34.98	24.22
VIT_18s0041g02190.t01	Wine grape	cytosol	17.28	20.1
Os12t0596900-01	Rice	extracellular, plasma membrane	10.49	17.65

Protein Annotations

MapMan:19.2.2.1.7	Gene3D:2.10.110.10	EntrezGene:4352699	ProteinID:ABA99197.2	EMBL:AK065760	ProteinID:BAF30207.1
ProteinID:BAT17926.1	ProteinID:BAT17927.1	InterPro:DA1-like	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001781	InterPro:IPR003903	EnsemblPlantsGene:Os12g0596800	EnsemblPlants:Os12t0596800-01	PFAM:PF00412	PFAM:PF02809
PFAM:PF12315	ScanProsite:PS00478	PFscan:PS50023	PFscan:PS50330	PANTHER:PTHR24209	PANTHER:PTHR24209:SF11
UniProt:Q2QMP4	SMART:SM00132	SMART:SM00726	SUPFAM:SSF57716	InterPro:UIM_dom	UniParc:UPI0000D89E6D
RefSeq:XP_015618088.1	InterPro:Znf_LIM	SEG:seg	:	:	:

Description

Zinc finger, LIM-type domain containing protein. (Os12t0596800-01);Similar to Zinc ion binding protein. (Os12t0596800-02)

Coordinates

chr12:+:25051273..25056620

Molecular Weight (calculated)

55018.2 Da

IEP (calculated)

5.835

GRAVY (calculated)

-0.514

Length

486 amino acids

Sequence
(BLAST)

001: MGWLNKIFKG SVNRVSRGHY DGSWHEGHSS DNARGAYDES DNEDIDRAIA LSLSEEQNKG KAVDIDYNLE EDEQLARALQ ESLNADSPPR QNIPVENVPS
101: EPPRELPPIL FASSGSRTCA GCKNPIGHGR FLSCMDSVWH PQCFRCFACN KPISEYEFAM HEDQPYHKSC YKDFFHPKCD VCKNFIPTNR NGLIEYRAHP
201: FWMQKYCPSH EDDGTPRCCS CERMEPMDIK YITLDDGRKL CLECLNSSIM DTPECQQLYM DIQEFFEGLN MKVEQQVPIL LVERQALNEA LETEKNGHHL
301: PETRGLCLSE EQIVRTILRR PIIGPGNRII DMITAPYKLE RRCEVTAILI LYGLPRLQTG SILAHEMMHA YLRLKGFRSL SPQVEEGICQ VLSHMWLESE
401: IIFGSSIDIS ATSVASSSSS SSTPTTSKKG AKTEFEKKLG AFIKHQIETD SSEAYGDGFR AANRAVESYG LRSTLNHMKM TGSFPY

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.