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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH33082 Soybean cytosol 14.55 78.89
TraesCS2D01G016500.1 Wheat cytosol 35.25 78.18
GSMUA_Achr9P07650_001 Banana cytosol 50.61 76.71
GSMUA_Achr6P28210_001 Banana cytosol 72.95 74.63
VIT_18s0001g11820.t01 Wine grape cytosol 71.31 72.65
Solyc02g089930.2.1 Tomato cytosol 75.2 71.26
Os06t0182500-02 Rice cytosol 70.9 71.19
PGSC0003DMT400026022 Potato cytosol 75.2 71.12
GSMUA_Achr7P00700_001 Banana endoplasmic reticulum 62.91 68.83
Zm00001d035844_P004 Maize cytosol 71.11 68.31
KXG19479 Sorghum cytosol 71.31 67.97
VIT_04s0023g01040.t01 Wine grape plasma membrane 80.53 67.64
KRH08326 Soybean cytosol 72.95 67.3
TraesCS2B01G007700.1 Wheat cytosol 69.47 67.26
TraesCS2D01G016900.1 Wheat cytosol 69.26 67.06
TraesCSU01G007800.1 Wheat cytosol 69.26 67.06
KRH76891 Soybean cytosol 73.98 66.12
KRH28579 Soybean cytosol 73.57 63.77
GSMUA_Achr4P23130_001 Banana mitochondrion 62.5 63.67
TraesCS5A01G060800.1 Wheat cytosol 63.52 63.52
TraesCS5D01G072300.1 Wheat nucleus 63.52 63.52
Os12t0596800-01 Rice plasma membrane 62.7 62.96
KRH69970 Soybean cytosol 72.95 61.81
Os03t0626600-01 Rice plasma membrane 62.09 61.71
EES16286 Sorghum cytosol 63.73 61.22
OQU91328 Sorghum cytosol, mitochondrion 62.7 60.59
Zm00001d033289_P001 Maize cytosol 12.7 60.19
TraesCS5B01G071300.1 Wheat mitochondrion 63.32 59.88
Zm00001d033297_P003 Maize cytosol, mitochondrion 61.68 59.84
AT4G36860.3 Thale cress cytosol 70.29 59.45
CDX75603 Canola mitochondrion 69.06 56.93
CDX69251 Canola mitochondrion, nucleus 69.26 56.62
Bra011712.1-P Field mustard cytosol, mitochondrion 69.06 56.35
GSMUA_Achr9P07640_001 Banana cytosol 17.83 55.77
KRH26214 Soybean cytosol 44.47 54.8
TraesCS4A01G245200.2 Wheat cytosol 59.22 53.62
TraesCS4B01G070200.1 Wheat cytosol 59.02 52.84
TraesCS4D01G069000.1 Wheat cytosol 59.22 52.55
VIT_13s0019g02430.t01 Wine grape plastid 53.69 51.88
Zm00001d030953_P001 Maize plastid 56.35 49.02
VIT_18s0041g02180.t01 Wine grape mitochondrion 40.37 28.55
VIT_18s0041g02190.t01 Wine grape cytosol 20.49 23.92
Protein Annotations
EntrezGene:100258119wikigene:100258119MapMan:19.2.2.1.7Gene3D:2.10.110.10ProteinID:CCB44492ProteinID:CCB44492.1
ncoils:CoilInterPro:DA1-likeUniProt:F6GX06EMBL:FN594959GO:GO:0003674GO:GO:0005488
GO:GO:0046872InterPro:IPR001781InterPro:IPR003903EntrezGene:LOC100258119wikigene:LOC100258119PFAM:PF00412
PFAM:PF12315ScanProsite:PS00478PFscan:PS50023PFscan:PS50330PANTHER:PTHR24209PANTHER:PTHR24209:SF11
SMART:SM00132SMART:SM00726SUPFAM:SSF57716TIGR:TC64678TIGR:TC65997InterPro:UIM_dom
UniParc:UPI000210A028ArrayExpress:VIT_04s0023g01030EnsemblPlantsGene:VIT_04s0023g01030EnsemblPlants:VIT_04s0023g01030.t01unigene:Vvi.506RefSeq:XP_002275259
RefSeq:XP_002275259.2RefSeq:XP_010649209.1RefSeq:XP_010649210.1InterPro:Znf_LIMSEG:seg:
Description
No Description!
Coordinates
chr4:+:17449558..17456408
Molecular Weight (calculated)
55103.9 Da
IEP (calculated)
5.555
GRAVY (calculated)
-0.536
Length
488 amino acids
Sequence
(BLAST)
001: MDWLTKILKG SGHKISEGQY HGRYGDDRIW EEPSTPVDVS TDFDHDDLAV AMARSLEDYP EEDQKGKKVV DTESQLEEDE QLARALQESL NVESPPRHDA
101: GNIFQPFPSF FSPGYRICAG CNCEIGHGRY LSCMGAVWHP ECFRCRACGL PIFEHEFSMS GSHPYHKSCY KEQNHPKCDV CRNFIPTNAA GLIEYRAHPF
201: WMQKYCPSHE HDGTPRCCSC ERMEARDTRY LSLDDGRKLC LECLDSAIME TVECQPLYLE IQEFYEGLNM KVEQQVPLLL VERQALNEAM EGEKNGHHHL
301: PETRGLCLSE EQTVSTISGR PRIGTGYRII DMMTEPYRLI RRCEVTAILI LYGLPRLLTG SILAHEMMHA WLRLKGYPNL SQDVEEGICQ VLAYMWLDSE
401: IYSSAGSDVA SASSSSSSSS SSSSSSTTSK KGARSQFEKK LGEFFKHQIE TDSSPAYGDG FRAGNQAVQK YGLKSTLDHI RLTGSFPY
Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)
001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
Arabidopsis Description
LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.