Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH33082 | Soybean | cytosol | 14.55 | 78.89 |
TraesCS2D01G016500.1 | Wheat | cytosol | 35.25 | 78.18 |
GSMUA_Achr9P07650_001 | Banana | cytosol | 50.61 | 76.71 |
GSMUA_Achr6P28210_001 | Banana | cytosol | 72.95 | 74.63 |
VIT_18s0001g11820.t01 | Wine grape | cytosol | 71.31 | 72.65 |
Solyc02g089930.2.1 | Tomato | cytosol | 75.2 | 71.26 |
Os06t0182500-02 | Rice | cytosol | 70.9 | 71.19 |
PGSC0003DMT400026022 | Potato | cytosol | 75.2 | 71.12 |
GSMUA_Achr7P00700_001 | Banana | endoplasmic reticulum | 62.91 | 68.83 |
Zm00001d035844_P004 | Maize | cytosol | 71.11 | 68.31 |
KXG19479 | Sorghum | cytosol | 71.31 | 67.97 |
VIT_04s0023g01040.t01 | Wine grape | plasma membrane | 80.53 | 67.64 |
KRH08326 | Soybean | cytosol | 72.95 | 67.3 |
TraesCS2B01G007700.1 | Wheat | cytosol | 69.47 | 67.26 |
TraesCS2D01G016900.1 | Wheat | cytosol | 69.26 | 67.06 |
TraesCSU01G007800.1 | Wheat | cytosol | 69.26 | 67.06 |
KRH76891 | Soybean | cytosol | 73.98 | 66.12 |
KRH28579 | Soybean | cytosol | 73.57 | 63.77 |
GSMUA_Achr4P23130_001 | Banana | mitochondrion | 62.5 | 63.67 |
TraesCS5A01G060800.1 | Wheat | cytosol | 63.52 | 63.52 |
TraesCS5D01G072300.1 | Wheat | nucleus | 63.52 | 63.52 |
Os12t0596800-01 | Rice | plasma membrane | 62.7 | 62.96 |
KRH69970 | Soybean | cytosol | 72.95 | 61.81 |
Os03t0626600-01 | Rice | plasma membrane | 62.09 | 61.71 |
EES16286 | Sorghum | cytosol | 63.73 | 61.22 |
OQU91328 | Sorghum | cytosol, mitochondrion | 62.7 | 60.59 |
Zm00001d033289_P001 | Maize | cytosol | 12.7 | 60.19 |
TraesCS5B01G071300.1 | Wheat | mitochondrion | 63.32 | 59.88 |
Zm00001d033297_P003 | Maize | cytosol, mitochondrion | 61.68 | 59.84 |
AT4G36860.3 | Thale cress | cytosol | 70.29 | 59.45 |
CDX75603 | Canola | mitochondrion | 69.06 | 56.93 |
CDX69251 | Canola | mitochondrion, nucleus | 69.26 | 56.62 |
Bra011712.1-P | Field mustard | cytosol, mitochondrion | 69.06 | 56.35 |
GSMUA_Achr9P07640_001 | Banana | cytosol | 17.83 | 55.77 |
KRH26214 | Soybean | cytosol | 44.47 | 54.8 |
TraesCS4A01G245200.2 | Wheat | cytosol | 59.22 | 53.62 |
TraesCS4B01G070200.1 | Wheat | cytosol | 59.02 | 52.84 |
TraesCS4D01G069000.1 | Wheat | cytosol | 59.22 | 52.55 |
VIT_13s0019g02430.t01 | Wine grape | plastid | 53.69 | 51.88 |
Zm00001d030953_P001 | Maize | plastid | 56.35 | 49.02 |
VIT_18s0041g02180.t01 | Wine grape | mitochondrion | 40.37 | 28.55 |
VIT_18s0041g02190.t01 | Wine grape | cytosol | 20.49 | 23.92 |
Protein Annotations
EntrezGene:100258119 | wikigene:100258119 | MapMan:19.2.2.1.7 | Gene3D:2.10.110.10 | ProteinID:CCB44492 | ProteinID:CCB44492.1 |
ncoils:Coil | InterPro:DA1-like | UniProt:F6GX06 | EMBL:FN594959 | GO:GO:0003674 | GO:GO:0005488 |
GO:GO:0046872 | InterPro:IPR001781 | InterPro:IPR003903 | EntrezGene:LOC100258119 | wikigene:LOC100258119 | PFAM:PF00412 |
PFAM:PF12315 | ScanProsite:PS00478 | PFscan:PS50023 | PFscan:PS50330 | PANTHER:PTHR24209 | PANTHER:PTHR24209:SF11 |
SMART:SM00132 | SMART:SM00726 | SUPFAM:SSF57716 | TIGR:TC64678 | TIGR:TC65997 | InterPro:UIM_dom |
UniParc:UPI000210A028 | ArrayExpress:VIT_04s0023g01030 | EnsemblPlantsGene:VIT_04s0023g01030 | EnsemblPlants:VIT_04s0023g01030.t01 | unigene:Vvi.506 | RefSeq:XP_002275259 |
RefSeq:XP_002275259.2 | RefSeq:XP_010649209.1 | RefSeq:XP_010649210.1 | InterPro:Znf_LIM | SEG:seg | : |
Description
No Description!
Coordinates
chr4:+:17449558..17456408
Molecular Weight (calculated)
55103.9 Da
IEP (calculated)
5.555
GRAVY (calculated)
-0.536
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MDWLTKILKG SGHKISEGQY HGRYGDDRIW EEPSTPVDVS TDFDHDDLAV AMARSLEDYP EEDQKGKKVV DTESQLEEDE QLARALQESL NVESPPRHDA
101: GNIFQPFPSF FSPGYRICAG CNCEIGHGRY LSCMGAVWHP ECFRCRACGL PIFEHEFSMS GSHPYHKSCY KEQNHPKCDV CRNFIPTNAA GLIEYRAHPF
201: WMQKYCPSHE HDGTPRCCSC ERMEARDTRY LSLDDGRKLC LECLDSAIME TVECQPLYLE IQEFYEGLNM KVEQQVPLLL VERQALNEAM EGEKNGHHHL
301: PETRGLCLSE EQTVSTISGR PRIGTGYRII DMMTEPYRLI RRCEVTAILI LYGLPRLLTG SILAHEMMHA WLRLKGYPNL SQDVEEGICQ VLAYMWLDSE
401: IYSSAGSDVA SASSSSSSSS SSSSSSTTSK KGARSQFEKK LGEFFKHQIE TDSSPAYGDG FRAGNQAVQK YGLKSTLDHI RLTGSFPY
101: GNIFQPFPSF FSPGYRICAG CNCEIGHGRY LSCMGAVWHP ECFRCRACGL PIFEHEFSMS GSHPYHKSCY KEQNHPKCDV CRNFIPTNAA GLIEYRAHPF
201: WMQKYCPSHE HDGTPRCCSC ERMEARDTRY LSLDDGRKLC LECLDSAIME TVECQPLYLE IQEFYEGLNM KVEQQVPLLL VERQALNEAM EGEKNGHHHL
301: PETRGLCLSE EQTVSTISGR PRIGTGYRII DMMTEPYRLI RRCEVTAILI LYGLPRLLTG SILAHEMMHA WLRLKGYPNL SQDVEEGICQ VLAYMWLDSE
401: IYSSAGSDVA SASSSSSSSS SSSSSSTTSK KGARSQFEKK LGEFFKHQIE TDSSPAYGDG FRAGNQAVQK YGLKSTLDHI RLTGSFPY
001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
Arabidopsis Description
LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.