Factsheet for VIT_18s0001g11820.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P28210_001	Banana	cytosol	79.75	80.08
GSMUA_Achr9P07650_001	Banana	cytosol	53.24	79.19
TraesCS2D01G016500.1	Wheat	cytosol	34.66	75.45
Os06t0182500-02	Rice	cytosol	75.57	74.49
Solyc04g079840.2.1	Tomato	cytosol	73.49	72.43
PGSC0003DMT400043506	Potato	cytosol	73.49	72.43
VIT_04s0023g01030.t01	Wine grape	cytosol	72.65	71.31
TraesCS2D01G016900.1	Wheat	cytosol	73.49	69.84
Zm00001d035844_P004	Maize	cytosol	73.9	69.69
TraesCS2B01G007700.1	Wheat	cytosol	73.28	69.64
KXG19479	Sorghum	cytosol	74.32	69.53
TraesCSU01G007800.1	Wheat	cytosol	73.07	69.44
KRH05774	Soybean	cytosol	68.48	68.62
KRH15264	Soybean	cytosol	69.1	68.53
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	62.42	67.04
CDY41035	Canola	cytosol, mitochondrion	69.31	65.48
GSMUA_Achr9P07640_001	Banana	cytosol	21.29	65.38
CDY26685	Canola	cytosol, mitochondrion	68.89	65.09
GSMUA_Achr4P23130_001	Banana	mitochondrion	64.3	64.3
Bra016514.1-P	Field mustard	cytosol	61.8	64.07
Bra025725.1-P	Field mustard	cytosol, mitochondrion	69.1	62.81
CDX83776	Canola	cytosol	66.81	62.62
CDX96669	Canola	cytosol	66.18	62.04
AT1G19270.1	Thale cress	cytosol, mitochondrion	68.68	61.84
Os03t0626600-01	Rice	plasma membrane	62.63	61.1
TraesCS5A01G060800.1	Wheat	cytosol	61.38	60.25
TraesCS5D01G072300.1	Wheat	nucleus	61.38	60.25
Os12t0596800-01	Rice	plasma membrane	60.75	59.88
Zm00001d033289_P001	Maize	cytosol	12.73	59.22
OQU91328	Sorghum	cytosol, mitochondrion	61.59	58.42
EES16286	Sorghum	cytosol	61.59	58.07
Zm00001d033297_P003	Maize	cytosol, mitochondrion	60.54	57.65
TraesCS5B01G071300.1	Wheat	mitochondrion	61.59	57.17
VIT_04s0023g01040.t01	Wine grape	plasma membrane	67.01	55.25
TraesCS4A01G245200.2	Wheat	cytosol	57.41	51.02
TraesCS4B01G070200.1	Wheat	cytosol	57.41	50.46
TraesCS4D01G069000.1	Wheat	cytosol	57.83	50.36
VIT_13s0019g02430.t01	Wine grape	plastid	52.19	49.51
Zm00001d030953_P001	Maize	plastid	54.49	46.52
VIT_18s0041g02180.t01	Wine grape	mitochondrion	43.63	30.29
VIT_18s0041g02190.t01	Wine grape	cytosol	21.09	24.16

Protein Annotations

EntrezGene:100253933	wikigene:100253933	MapMan:19.2.2.1.7	Gene3D:2.10.110.10	EMBL:AM484789	ProteinID:CAN64300
ProteinID:CAN64300.1	ProteinID:CCB45910	ProteinID:CCB45910.1	InterPro:DA1-like	UniProt:F6H033	EMBL:FN595227
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	InterPro:IPR003903	EntrezGene:LOC100253933
wikigene:LOC100253933	PFAM:PF00412	PFAM:PF02809	PFAM:PF12315	ScanProsite:PS00478	PFscan:PS50023
PFscan:PS50330	PANTHER:PTHR24209	PANTHER:PTHR24209:SF11	SMART:SM00132	SMART:SM00726	SUPFAM:SSF57716
TIGR:TC58347	InterPro:UIM_dom	UniParc:UPI00015C8153	ArrayExpress:VIT_18s0001g11820	EnsemblPlantsGene:VIT_18s0001g11820	EnsemblPlants:VIT_18s0001g11820.t01
unigene:Vvi.14860	RefSeq:XP_002283584	RefSeq:XP_002283584.2	RefSeq:XP_010664641.1	InterPro:Znf_LIM	SEG:seg

Description

No Description!

Coordinates

chr18:+:10082521..10096921

Molecular Weight (calculated)

54019.0 Da

IEP (calculated)

6.498

GRAVY (calculated)

-0.537

Length

479 amino acids

Sequence
(BLAST)

001: MGWLNKIFKG SSHKISEGNY HGRYQGDTVQ NEPSCSGDVW AETENEDIDR AIALSLSEEE QKGKKVIDNE FQLEEDEQLA RAIQESLNIE SPPQHGNGNG
101: NGNIYQPIPF PYSTGFRICA GCNTEIGHGR FLSCMGAVWH PECFRCHGCG YPISDYEYSM NGNYPYHKSC YKEHYHPKCD VCKHFIPTNP AGLIEYRAHP
201: FWVQKYCPSH EHDRTPRCCS CERMEPRDTR YVALNDGRKL CLECLDSAIM DTNECQPLYL DIQEFYEGLN MKVQQQVPLL LVERQALNEA MEGEKSGHHH
301: MPETRGLCLS EEQTVSTILR RPKIGTGNRV MNMITEPCKL TRRCDVTAVL ILYGLPRLLT GSILAHEMMH AWLRLNGYRT LAQDVEEGIC QVLAYMWLDA
401: ELTSGSGSNV PSTSSASTSS KKGAGSQCER KLGQFFKHQI ESDTSLVYGA GFRAGHQAVL KYGLPATLKH IHLTGNFPY

Best Arabidopsis Sequence Match ( AT1G19270.1 )
(BLAST)

001: MGWFNKIFKG SNQRLRVGNN KHNHNVYYDN YPTASHDDEP SAADTDADND EPHHTQEPST SEDNTSNDQE NEDIDRAIAL SLLEENQEQT SISGKYSMPV
101: DEDEQLARAL QESMVVGNSP RHKSGSTYDN GNAYGAGDLY GNGHMYGGGN VYANGDIYYP RPITFQMDFR ICAGCNMEIG HGRFLNCLNS LWHPECFRCY
201: GCSQPISEYE FSTSGNYPFH KACYRERYHP KCDVCSHFIP TNHAGLIEYR AHPFWVQKYC PSHEHDATPR CCSCERMEPR NTRYVELNDG RKLCLECLDS
301: AVMDTMQCQP LYLQIQNFYE GLNMKVEQEV PLLLVERQAL NEAREGEKNG HYHMPETRGL CLSEEQTVST VRKRSKHGTG KWAGNITEPY KLTRQCEVTA
401: ILILFGLPRL LTGSILAHEM MHAWMRLKGF RTLSQDVEEG ICQVMAHKWL DAELAAGSTN SNAASSSSSS QGLKKGPRSQ YERKLGEFFK HQIESDASPV
501: YGDGFRAGRL AVHKYGLRKT LEHIQMTGRF PV

Arabidopsis Description

DA1DA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WC71]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.