Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G016500.1 | Wheat | cytosol | 41.36 | 91.36 |
| TraesCS2D01G016900.1 | Wheat | cytosol | 91.77 | 88.49 |
| HORVU2Hr1G002700.14 | Barley | cytosol | 91.36 | 88.1 |
| TraesCS2B01G007700.1 | Wheat | cytosol | 91.36 | 88.1 |
| TraesCSU01G007800.1 | Wheat | cytosol | 91.15 | 87.9 |
| KXG19479 | Sorghum | cytosol | 90.95 | 86.33 |
| Zm00001d035844_P004 | Maize | cytosol | 89.92 | 86.02 |
| GSMUA_Achr9P07650_001 | Banana | cytosol | 55.97 | 84.47 |
| GSMUA_Achr6P28210_001 | Banana | cytosol | 80.04 | 81.55 |
| VIT_18s0001g11820.t01 | Wine grape | cytosol | 74.49 | 75.57 |
| KRH33082 | Soybean | cytosol | 13.79 | 74.44 |
| Solyc04g079840.2.1 | Tomato | cytosol | 71.19 | 71.19 |
| VIT_04s0023g01030.t01 | Wine grape | cytosol | 71.19 | 70.9 |
| PGSC0003DMT400043506 | Potato | cytosol | 70.78 | 70.78 |
| Solyc02g089930.2.1 | Tomato | cytosol | 72.63 | 68.54 |
| PGSC0003DMT400026022 | Potato | cytosol | 72.02 | 67.83 |
| KRH05774 | Soybean | cytosol | 65.43 | 66.53 |
| KRH15264 | Soybean | cytosol | 65.43 | 65.84 |
| Bra016514.1-P | Field mustard | cytosol | 59.88 | 62.99 |
| KRH08326 | Soybean | cytosol | 68.52 | 62.95 |
| KRH76891 | Soybean | cytosol | 69.55 | 61.9 |
| CDY41035 | Canola | cytosol, mitochondrion | 64.4 | 61.74 |
| CDY26685 | Canola | cytosol, mitochondrion | 64.2 | 61.54 |
| Os12t0596800-01 | Rice | plasma membrane | 61.52 | 61.52 |
| Os03t0626600-01 | Rice | plasma membrane | 61.73 | 61.1 |
| GSMUA_Achr9P07640_001 | Banana | cytosol | 19.55 | 60.9 |
| KRH28579 | Soybean | cytosol | 70.16 | 60.57 |
| CDX83776 | Canola | cytosol | 62.96 | 59.88 |
| CDX96669 | Canola | cytosol | 62.76 | 59.69 |
| Bra025725.1-P | Field mustard | cytosol, mitochondrion | 64.4 | 59.39 |
| AT4G36860.3 | Thale cress | cytosol | 70.37 | 59.27 |
| AT1G19270.1 | Thale cress | cytosol, mitochondrion | 64.2 | 58.65 |
| KRH69970 | Soybean | cytosol | 68.31 | 57.64 |
| CDX75603 | Canola | mitochondrion | 69.55 | 57.09 |
| CDX69251 | Canola | mitochondrion, nucleus | 69.96 | 56.95 |
| Bra011712.1-P | Field mustard | cytosol, mitochondrion | 69.96 | 56.86 |
| VIT_04s0023g01040.t01 | Wine grape | plasma membrane | 66.26 | 55.42 |
| Os03t0267800-01 | Rice | cytosol | 53.7 | 52.1 |
| KRH26214 | Soybean | cytosol | 42.18 | 51.77 |
| CDY18615 | Canola | cytosol | 36.01 | 49.86 |
| Bra037160.1-P | Field mustard | cytosol | 38.89 | 48.46 |
| Solyc01g105210.2.1 | Tomato | extracellular | 11.73 | 47.11 |
| CDX81385 | Canola | cytosol | 40.53 | 41.65 |
| CDX81383 | Canola | cytosol | 39.3 | 40.04 |
| AT5G66640.5 | Thale cress | nucleus | 37.45 | 37.76 |
| PGSC0003DMT400032779 | Potato | cytosol | 16.05 | 36.97 |
| CDY18616 | Canola | nucleus | 38.07 | 36.85 |
| Solyc01g105200.2.1 | Tomato | cytosol | 12.14 | 36.42 |
| CDY47008 | Canola | cytosol, nucleus, peroxisome | 34.16 | 36.24 |
| PGSC0003DMT400032774 | Potato | cytosol | 21.19 | 36.14 |
| CDX81381 | Canola | cytosol | 38.07 | 35.99 |
| CDX81382 | Canola | cytosol | 37.45 | 35.07 |
| Bra037159.1-P | Field mustard | cytosol | 36.01 | 33.91 |
| AT5G66610.2 | Thale cress | cytosol | 40.95 | 33.9 |
| AT5G66620.1 | Thale cress | cytosol | 41.77 | 31.52 |
| CDY45247 | Canola | cytosol | 39.09 | 30.79 |
| CDY54205 | Canola | cytosol | 39.09 | 29.73 |
| Solyc01g105180.2.1 | Tomato | cytosol | 23.46 | 29.31 |
| VIT_18s0041g02180.t01 | Wine grape | mitochondrion | 40.33 | 28.41 |
| CDY54206 | Canola | cytosol | 24.9 | 27.94 |
| CDY54207 | Canola | extracellular, plasma membrane | 37.86 | 27.38 |
| AT5G66630.1 | Thale cress | cytosol | 35.39 | 24.5 |
| VIT_18s0041g02190.t01 | Wine grape | cytosol | 19.34 | 22.49 |
| Os12t0596900-01 | Rice | extracellular, plasma membrane | 11.52 | 19.38 |
Protein Annotations
| MapMan:19.2.2.1.7 | Gene3D:2.10.110.10 | EntrezGene:4340317 | ProteinID:BAD72536.1 | ProteinID:BAF18899.1 | ProteinID:BAS96482.1 |
| ncoils:Coil | InterPro:DA1-like | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001781 |
| InterPro:IPR003903 | EnsemblPlantsGene:Os06g0182500 | EnsemblPlants:Os06t0182500-02 | PFAM:PF00412 | PFAM:PF02809 | PFAM:PF12315 |
| ScanProsite:PS00478 | PFscan:PS50023 | PFscan:PS50330 | PANTHER:PTHR24209 | PANTHER:PTHR24209:SF11 | UniProt:Q5SMM0 |
| SMART:SM00132 | SMART:SM00726 | SUPFAM:SSF57716 | InterPro:UIM_dom | UniParc:UPI000046D51B | RefSeq:XP_015644083.1 |
| RefSeq:XP_015644084.1 | InterPro:Znf_LIM | SEG:seg | : | : | : |
Description
Zinc finger, LIM-type domain containing protein. (Os06t0182500-01);Zinc finger, LIM-type domain containing protein. (Os06t0182500-02)
Coordinates
chr6:+:4093312..4100863
Molecular Weight (calculated)
55164.7 Da
IEP (calculated)
6.502
GRAVY (calculated)
-0.505
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWLTKFFRG STHKISEGQY HSKPAEETIW NGPSNSAVVT DVPSEFDNED IARAISLSLL EEEQRKAKAI EKDMHLEEDE QLARAIQESL NVESPPRARE
101: NGNANGGNMY QPLPFMFSSG FRTCAGCHSE IGHGRFLSCM GAVWHPECFR CHACNQPIYD YEFSMSGNHP YHKTCYKERF HPKCDVCKQF IPTNMNGLIE
201: YRAHPFWLQK YCPSHEVDGT PRCCSCERME PRESRYVLLD DGRKLCLECL DSAVMDTSEC QPLYLEIQEF YEGLNMKVEQ QVPLLLVERQ ALNEAMEGEK
301: TGHHHLPETR GLCLSEEQTV STILRRPRMA GNKVMEMITE PYRLTRRCEV TAILILYGLP RLLTGSILAH EMMHAWLRLK GYRTLSPDVE EGICQVLAHM
401: WIESEIIAGS GSNGASTSSS SSASTSSKKG GRSQFERKLG DFFKHQIESD TSMAYGDGFR AGNRAVLQYG LKRTLEHIRL TGTFPF
101: NGNANGGNMY QPLPFMFSSG FRTCAGCHSE IGHGRFLSCM GAVWHPECFR CHACNQPIYD YEFSMSGNHP YHKTCYKERF HPKCDVCKQF IPTNMNGLIE
201: YRAHPFWLQK YCPSHEVDGT PRCCSCERME PRESRYVLLD DGRKLCLECL DSAVMDTSEC QPLYLEIQEF YEGLNMKVEQ QVPLLLVERQ ALNEAMEGEK
301: TGHHHLPETR GLCLSEEQTV STILRRPRMA GNKVMEMITE PYRLTRRCEV TAILILYGLP RLLTGSILAH EMMHAWLRLK GYRTLSPDVE EGICQVLAHM
401: WIESEIIAGS GSNGASTSSS SSASTSSKKG GRSQFERKLG DFFKHQIESD TSMAYGDGFR AGNRAVLQYG LKRTLEHIRL TGTFPF
001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
Arabidopsis Description
LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.