Factsheet for Bra011712.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75603	Canola	mitochondrion	97.49	98.48
CDX69251	Canola	mitochondrion, nucleus	96.82	96.98
AT4G36860.3	Thale cress	cytosol	84.95	88.04
KRH33082	Soybean	cytosol	12.04	80.0
TraesCS2D01G016500.1	Wheat	cytosol	28.26	76.82
GSMUA_Achr9P07650_001	Banana	cytosol	41.3	76.71
GSMUA_Achr6P28210_001	Banana	cytosol	56.52	70.86
Os06t0182500-02	Rice	cytosol	56.86	69.96
VIT_04s0023g01030.t01	Wine grape	cytosol	56.35	69.06
KRH08326	Soybean	cytosol	59.87	67.67
KRH76891	Soybean	cytosol	61.54	67.4
Solyc02g089930.2.1	Tomato	cytosol	57.86	67.18
PGSC0003DMT400026022	Potato	cytosol	57.86	67.05
Zm00001d035844_P004	Maize	cytosol	56.69	66.73
TraesCS2B01G007700.1	Wheat	cytosol	56.02	66.47
TraesCS2D01G016900.1	Wheat	cytosol	55.69	66.07
TraesCSU01G007800.1	Wheat	cytosol	55.69	66.07
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	49.16	65.92
KXG19479	Sorghum	cytosol	56.35	65.82
KRH28579	Soybean	cytosol	61.2	65.01
KRH69970	Soybean	cytosol	60.54	62.85
GSMUA_Achr4P23130_001	Banana	mitochondrion	49.67	62.0
TraesCS5A01G060800.1	Wheat	cytosol	49.67	60.86
TraesCS5D01G072300.1	Wheat	nucleus	49.67	60.86
Os03t0626600-01	Rice	plasma membrane	49.83	60.69
Os12t0596800-01	Rice	plasma membrane	48.49	59.67
OQU91328	Sorghum	cytosol, mitochondrion	49.83	59.01
EES16286	Sorghum	cytosol	49.83	58.66
Bra016514.1-P	Field mustard	cytosol	45.32	58.66
Zm00001d033297_P003	Maize	cytosol, mitochondrion	48.83	58.05
TraesCS5B01G071300.1	Wheat	mitochondrion	49.67	57.56
KRH26214	Soybean	cytosol	37.79	57.07
Zm00001d033289_P001	Maize	cytosol	9.53	55.34
Bra025725.1-P	Field mustard	cytosol, mitochondrion	48.33	54.84
VIT_04s0023g01040.t01	Wine grape	plasma membrane	52.68	54.22
TraesCS4A01G245200.2	Wheat	cytosol	46.82	51.95
TraesCS4B01G070200.1	Wheat	cytosol	47.16	51.74
TraesCS4D01G069000.1	Wheat	cytosol	46.99	51.09
Bra037160.1-P	Field mustard	cytosol	32.61	50.0
Bra000152.1-P	Field mustard	plastid	41.14	47.86
GSMUA_Achr9P07640_001	Banana	cytosol	12.21	46.79
Zm00001d030953_P001	Maize	plastid	43.81	46.7
Bra005011.1-P	Field mustard	cytosol, plastid	38.46	45.91
Bra037159.1-P	Field mustard	cytosol	32.27	37.4

Protein Annotations

MapMan:19.2.2.1.7	Gene3D:2.10.110.10	EnsemblPlantsGene:Bra011712	EnsemblPlants:Bra011712.1	EnsemblPlants:Bra011712.1-P	ncoils:Coil
InterPro:DA1-like	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001781	InterPro:IPR003903
UniProt:M4D5F5	PFAM:PF00412	PFAM:PF12315	ScanProsite:PS00478	PFscan:PS50023	PFscan:PS50330
PANTHER:PTHR24209	SMART:SM00132	SMART:SM00726	SUPFAM:SSF57716	InterPro:UIM_dom	UniParc:UPI00025469A9
InterPro:Znf_LIM	SEG:seg	:	:	:	:

Description

AT4G36860 (E=5e-264) | zinc ion binding

Coordinates

chrA01:+:929716..934964

Molecular Weight (calculated)

68100.5 Da

IEP (calculated)

5.147

GRAVY (calculated)

-0.695

Length

598 amino acids

Sequence
(BLAST)

001: MVKKRRTHLS LIGSRGNPGK GWPRARKRLL LMPMGWLTKI LKGSSHKYSD GQANRRYNRE DRSLDTPRYS AEGSDFDKEE IECAIALSLS EQEHVIPQDD
101: KGKKVIEYKS ETEEDDDEDE DEDEDEEDDD EEHMRAQVEA AEEEEKKVAQ AQIEEEEKRR AEEAELEELE KQLAKARLEE EEVRRAKAQL EEDEQLAKAI
201: QESMNVGSPP PGYDSGSVFP SYPFLVPSRI CTGCRAEIGH GRFLSCMGGV WHPECFCCHA CDKPIIDCEF SMSGNRPYHK LCYKEQHHPK CDVCHNFIPT
301: NPAGLIEYRA HPFWMQKYCP SHERDGTPRC CSCERMEPKD TKYLILDDGR KLCLECLDSA IMDTNECQPL YLEIREFYEG LHMKVEQQIP MLLVERSALN
401: EAMEGEKHGH HHLPETRGLC LSEEQTVTTV LRRPKIGAGY KLIDMITEPC RLVRRCEVTA ILILYGLPRL LTGSILAHEM MHAWLRLNGY PNLRPEVEEG
501: ICQVLAHMWL ESETYAGSTL IDIASSSSSS SSAAVAIASS KKGERSDFEK KLGEFFKHQI ESDSSSAYGD GFRQGNQAVL THGLKRTLDH IRLTGTFP

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.