Factsheet for VIT_04s0023g01040.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
mitochondrion 3
endoplasmic reticulum 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0023g01030.t01	Wine grape	cytosol	67.64	80.53
TraesCS2D01G016500.1	Wheat	cytosol	28.92	76.36
KRH33082	Soybean	cytosol	11.7	75.56
GSMUA_Achr9P07650_001	Banana	cytosol	40.62	73.29
GSMUA_Achr6P28210_001	Banana	cytosol	56.45	68.76
VIT_18s0001g11820.t01	Wine grape	cytosol	55.25	67.01
Os06t0182500-02	Rice	cytosol	55.42	66.26
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	50.09	65.25
PGSC0003DMT400026022	Potato	cytosol	56.97	64.15
Solyc02g089930.2.1	Tomato	cytosol	56.63	63.88
TraesCS2B01G007700.1	Wheat	cytosol	54.22	62.5
KXG19479	Sorghum	cytosol	54.91	62.3
TraesCSU01G007800.1	Wheat	cytosol	54.04	62.3
TraesCS2D01G016900.1	Wheat	cytosol	54.04	62.3
Zm00001d035844_P004	Maize	cytosol	54.39	62.2
KRH08326	Soybean	cytosol	55.08	60.49
GSMUA_Achr4P23130_001	Banana	mitochondrion	48.71	59.08
KRH76891	Soybean	cytosol	55.42	58.97
TraesCS5A01G060800.1	Wheat	cytosol	49.4	58.81
TraesCS5D01G072300.1	Wheat	nucleus	49.23	58.61
Zm00001d033289_P001	Maize	cytosol	10.33	58.25
Os12t0596800-01	Rice	plasma membrane	48.02	57.41
KRH28579	Soybean	cytosol	54.91	56.66
Os03t0626600-01	Rice	plasma membrane	47.85	56.62
TraesCS5B01G071300.1	Wheat	mitochondrion	49.57	55.81
KRH69970	Soybean	cytosol	55.25	55.73
OQU91328	Sorghum	cytosol, mitochondrion	48.02	55.25
EES16286	Sorghum	cytosol	48.19	55.12
Zm00001d033297_P003	Maize	cytosol, mitochondrion	47.16	54.47
AT4G36860.3	Thale cress	cytosol	54.04	54.42
CDX75603	Canola	mitochondrion	54.56	53.55
CDX69251	Canola	mitochondrion, nucleus	54.56	53.1
Bra011712.1-P	Field mustard	cytosol, mitochondrion	54.22	52.68
TraesCS4A01G245200.2	Wheat	cytosol	46.13	49.72
KRH26214	Soybean	cytosol	33.73	49.49
TraesCS4B01G070200.1	Wheat	cytosol	46.13	49.17
TraesCS4D01G069000.1	Wheat	cytosol	46.47	49.09
GSMUA_Achr9P07640_001	Banana	cytosol	12.91	48.08
VIT_13s0019g02430.t01	Wine grape	plastid	40.62	46.73
Zm00001d030953_P001	Maize	plastid	43.72	45.28
VIT_18s0041g02180.t01	Wine grape	mitochondrion	32.87	27.68
VIT_18s0041g02190.t01	Wine grape	cytosol	16.01	22.25

Protein Annotations

EntrezGene:100244429	wikigene:100244429	MapMan:19.2.2.1.7	Gene3D:2.10.110.10	ProteinID:CCB44491	ProteinID:CCB44491.1
ncoils:Coil	InterPro:DA1-like	UniProt:F6GX05	EMBL:FN594959	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR001781	InterPro:IPR003903
EntrezGene:LOC100244429	wikigene:LOC100244429	PFAM:PF00412	PFAM:PF12315	ScanProsite:PS00478	PFscan:PS50023
PFscan:PS50330	PANTHER:PTHR24209	SMART:SM00132	SMART:SM00726	SUPFAM:SSF57716	TMHMM:TMhelix
InterPro:UIM_dom	UniParc:UPI000210A027	ArrayExpress:VIT_04s0023g01040	EnsemblPlantsGene:VIT_04s0023g01040	EnsemblPlants:VIT_04s0023g01040.t01	unigene:Vvi.24740
RefSeq:XP_002269581	RefSeq:XP_002269581.1	InterPro:Znf_LIM	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:+:17457400..17465593

Molecular Weight (calculated)

66064.2 Da

IEP (calculated)

6.423

GRAVY (calculated)

-0.372

Length

581 amino acids

Sequence
(BLAST)

001: MGAPGKRQNG WAKQPYHGEA AFYVLQLLMP LSSVLLVVFR KDPRYQGDYL LSSLIFPCLL CLQAISGIDR IPFCLQILTG KILLAHKGIT FVLMDWIKIL
101: EGSGHKISEV QYHGTDGDGI IWGEPSISEH GRMKFTLQGA PTDFDDQDIA VAIVRSIEDY EAEEDKKLKK LVDNESQLKE DEQLAKALQE SLNMESPPRR
201: DARNIFQPLT FSSLGFRICA RCNLEIGHER HLRRMGAVWH PECFRCHACG LRIFDLEFSV SGNRPYHESC YKDQNHPRCN VCKNFIPSNA AGETEYRAHP
301: FWMQEYCPSH EHDGTPRCCS CERTEVRDIR YLSLDDGRKL CLECLDSAIM DTLECQPLYL QIQEFYEGLN MKVEQQIPLL LVERQALNEA MEGEKSGHHL
401: LPETRGLCLS EEQTVSTISR RPRISTGYRI INMMTEPCRL VRRCEVTAIL ILYGLPRLLT GTILAHEMMH AWLKLKGYRN LRQDVEEGIC QVLAYMWLES
501: EIHSSSGNNV SSASTPSSSS TSEKGARSQF EKKLGEFFKD QIETDSSPAY GDGFRAGNQA VQQYGLKSTL DHIRLTGSFP Y

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.