Factsheet for TraesCS5B01G071300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G060800.1	Wheat	cytosol	93.41	98.77
TraesCS5D01G072300.1	Wheat	nucleus	93.02	98.36
HORVU5Hr1G016350.3	Barley	cytosol	92.05	97.34
Os12t0596800-01	Rice	plasma membrane	77.13	81.89
HORVU0Hr1G028930.1	Barley	cytosol	22.87	74.68
EES16286	Sorghum	cytosol	73.26	74.41
KRH33082	Soybean	cytosol	12.02	68.89
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	56.01	64.8
VIT_04s0023g01030.t01	Wine grape	cytosol	59.88	63.32
VIT_18s0001g11820.t01	Wine grape	cytosol	57.17	61.59
PGSC0003DMT400043506	Potato	cytosol	57.56	61.11
Zm00001d030953_P001	Maize	plastid	66.28	60.96
Solyc04g079840.2.1	Tomato	cytosol	57.36	60.91
TraesCS2B01G007700.1	Wheat	cytosol	58.14	59.52
Solyc02g089930.2.1	Tomato	cytosol	59.11	59.22
TraesCS4B01G070200.1	Wheat	cytosol	62.4	59.08
PGSC0003DMT400026022	Potato	cytosol	58.91	58.91
GSMUA_Achr4P23130_001	Banana	mitochondrion	53.1	57.2
KRH08326	Soybean	cytosol	57.75	56.33
KRH15264	Soybean	cytosol	51.55	55.07
KRH05774	Soybean	cytosol	50.97	55.02
Bra016514.1-P	Field mustard	cytosol	48.45	54.11
KRH76891	Soybean	cytosol	56.98	53.85
CDY26685	Canola	cytosol, mitochondrion	51.36	52.27
CDY41035	Canola	cytosol, mitochondrion	51.36	52.27
KRH28579	Soybean	cytosol	56.98	52.22
KRH69970	Soybean	cytosol	57.95	51.91
CDX96669	Canola	cytosol	50.19	50.68
CDX83776	Canola	cytosol	50.19	50.68
AT4G36860.3	Thale cress	cytosol	56.59	50.61
CDX75603	Canola	mitochondrion	57.75	50.34
Bra025725.1-P	Field mustard	cytosol, mitochondrion	51.36	50.28
CDX69251	Canola	mitochondrion, nucleus	57.95	50.08
Bra011712.1-P	Field mustard	cytosol, mitochondrion	57.56	49.67
AT1G19270.1	Thale cress	cytosol, mitochondrion	51.16	49.62
VIT_04s0023g01040.t01	Wine grape	plasma membrane	55.81	49.57
KRH26214	Soybean	cytosol	35.27	45.96
CDY18615	Canola	cytosol	31.01	45.58
Solyc01g105210.2.1	Tomato	extracellular	10.47	44.63
TraesCS4B01G210900.3	Wheat	cytosol	46.32	44.26
Bra037160.1-P	Field mustard	cytosol	33.14	43.85
CDX81383	Canola	cytosol	36.05	38.99
CDX81385	Canola	cytosol	35.08	38.27
PGSC0003DMT400032774	Potato	cytosol	19.77	35.79
CDY18616	Canola	nucleus	34.5	35.46
AT5G66640.5	Thale cress	nucleus	32.95	35.27
Solyc01g105200.2.1	Tomato	cytosol	11.05	35.19
CDY47008	Canola	cytosol, nucleus, peroxisome	31.01	34.93
CDX81381	Canola	cytosol	34.11	34.24
PGSC0003DMT400032779	Potato	cytosol	13.95	34.12
CDX81382	Canola	cytosol	33.14	32.95
Bra037159.1-P	Field mustard	cytosol	32.75	32.75
AT5G66610.2	Thale cress	cytosol	36.63	32.2
AT5G66620.1	Thale cress	cytosol	38.57	30.9
CDY45247	Canola	cytosol	36.63	30.63
CDY54205	Canola	cytosol	36.63	29.58
Solyc01g105180.2.1	Tomato	cytosol	21.32	28.28
CDY54206	Canola	cytosol	23.64	28.18
CDY54207	Canola	extracellular, plasma membrane	34.5	26.49
VIT_18s0041g02180.t01	Wine grape	mitochondrion	34.69	25.94
AT5G66630.1	Thale cress	cytosol	34.5	25.36
VIT_18s0041g02190.t01	Wine grape	cytosol	15.89	19.62

Protein Annotations

EnsemblPlants:TraesCS5B01G071300.1	EnsemblPlantsGene:TraesCS5B01G071300	Gene3D:2.10.110.10	InterPro:DA1-like	InterPro:IPR001781	InterPro:IPR003903
InterPro:UIM_dom	InterPro:Znf_LIM	PANTHER:PTHR24209	PANTHER:PTHR24209:SF11	PFAM:PF00412	PFAM:PF02809
PFAM:PF12315	PFscan:PS50023	PFscan:PS50330	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SMART:SM00726	SUPFAM:SSF57716	TIGR:cd09396	MapMan:19.2.2.1.7	:	:

Description

No Description!

Coordinates

chr5B:+:82458745..82462499

Molecular Weight (calculated)

58312.1 Da

IEP (calculated)

6.290

GRAVY (calculated)

-0.539

Length

516 amino acids

Sequence
(BLAST)

001: MSLWRSQQVL FLNSPCSRLQ DQIYKLQIMG WLNKIFKGSV NRVSRGHYDG HWHEGNQSEH TRDAYDESDS EDIARAIALS LAEQDPNKGK AIDPDYSLEE
101: DEQLARALQE SLNTESPPRQ NAPVENVPSE SIPTREPHQS VLPSSGFRTC AGCRKPIGHG RFLSCMDEVW HPQCFKCYAC NKPISEYEFA MHEDQPYHKS
201: CYKDFFHPKC DVCKNFIPTN KNGLIEYRAH PFWMQKYCPS HEDDGTPRCC SCERMEPTDI KYITLDDGRK LCLECLTSAT MDSPECQHLY MDIQEFFEGL
301: NMKVEQQVPL LLVERQALNE ALEAEKSGHH LPETRGLCLS EEQIVRTILK RPTIGPGNRI MDMITGPYKL VRRCEVTAIL ILYGLPRLQT GSILAHEMMH
401: AYLRLKGYRS LSPQVEEGIC QVLSHMWLES EIIAGASGNA SSSSASSSSS SAAPTSSKKG AKTEFEKKLG AFIKNQIETD SSVEYGDGFR AGIQAVEQYG
501: LRSTLAHMRL TGSFPY

Best Arabidopsis Sequence Match ( AT4G36860.3 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAVSE LYCFLVHFEL KIKGFLEFLI QEGSDFDKEE IECAIALSLS EQEHVIPQDD KGKKIIEYKS
101: ETEEDDDDDE DEDEEYMRAQ LEAAEEEERR VAQAQIEEEE KRRAEAQLEE TEKLLAKARL EEEEMRRSKA QLEEDELLAK ALQESMNVGS PPRYDPGNIL
201: QPYPFLIPSS HRICVGCQAE IGHGRFLSCM GGVWHPECFC CNACDKPIID YEFSMSGNRP YHKLCYKEQH HPKCDVCHNF IPTNPAGLIE YRAHPFWMQK
301: YCPSHERDGT PRCCSCERME PKDTKYLILD DGRKLCLECL DSAIMDTHEC QPLYLEIREF YEGLHMKVEQ QIPMLLVERS ALNEAMEGEK HGHHHLPETR
401: GLCLSEEQTV TTVLRRPRIG AGYKLIDMIT EPCRLIRRCE VTAILILYGL PRLLTGSILA HEMMHAWLRL NGYPNLRPEV EEGICQVLAH MWLESETYAG
501: STLVDIASSS SSAVVSASSK KGERSDFEKK LGEFFKHQIE SDSSSAYGDG FRQGNQAVLK HGLRRTLDHI RLTGTFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.