Factsheet for TraesCS4B01G210900.3

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU4Hr1G060560.7	Barley	cytosol	88.89	94.3
TraesCS4D01G211600.2	Wheat	endoplasmic reticulum	89.07	94.13
TraesCS4A01G093500.1	Wheat	endoplasmic reticulum	88.89	93.93
KXG39715	Sorghum	endoplasmic reticulum	78.33	83.27
Os03t0267800-01	Rice	cytosol	75.93	81.84
Zm00001d028567_P001	Maize	mitochondrion	73.15	76.85
Zm00001d047837_P003	Maize	cytosol	66.48	69.98
GSMUA_Achr10P...	Banana	mitochondrion	60.37	69.07
GSMUA_Achr5P07030_001	Banana	cytosol	59.81	68.87
GSMUA_Achr8P19520_001	Banana	cytosol	56.3	64.0
PGSC0003DMT400069927	Potato	cytosol	52.41	63.17
KRG97826	Soybean	cytosol	49.63	60.91
VIT_13s0019g02430.t01	Wine grape	plastid	53.7	57.43
Solyc05g052910.2.1	Tomato	plastid	52.96	56.75
KRH15044	Soybean	cytosol	52.41	56.15
CDY07633	Canola	plastid	51.48	54.19
Bra000152.1-P	Field mustard	plastid	51.3	53.89
CDY61785	Canola	plastid	51.48	53.88
KRH31044	Soybean	nucleus	50.56	53.63
TraesCS2B01G007700.1	Wheat	cytosol	49.63	53.17
CDX74829	Canola	cytosol, plastid	51.11	52.37
AT2G39830.2	Thale cress	cytosol, plastid	51.3	52.17
CDY20486	Canola	cytosol, plastid	50.74	52.09
Bra005011.1-P	Field mustard	cytosol, plastid	47.59	51.3
Solyc03g079910.2.1	Tomato	cytosol	52.04	51.18
KRH73095	Soybean	plastid	52.96	50.98
PGSC0003DMT400055872	Potato	cytosol	49.26	50.47
TraesCS5B01G071300.1	Wheat	mitochondrion	44.26	46.32
TraesCS4B01G070200.1	Wheat	cytosol	45.0	44.59

Protein Annotations

EnsemblPlants:TraesCS4B01G210900.3	EnsemblPlantsGene:TraesCS4B01G210900	Gene3D:2.10.110.10	InterPro:DA1-like	InterPro:IPR001781	InterPro:Znf_LIM
PANTHER:PTHR24209	PANTHER:PTHR24209:SF21	PFAM:PF00412	PFAM:PF12315	PFscan:PS50023	ScanProsite:PS00478
SEG:seg	SMART:SM00132	SUPFAM:SSF57716	TIGR:cd09396	MapMan:19.2.2.1.7	:

Description

No Description!

Coordinates

chr4B:+:449504253..449506896

Molecular Weight (calculated)

62079.4 Da

IEP (calculated)

8.153

GRAVY (calculated)

-0.616

Length

540 amino acids

Sequence
(BLAST)

001: MKWLCNFLKG TKPVESNHRR RPRVTAGEES SLWQQEPVRP KVLIPSPCQS PPFFFHIFMK LSHSIHPHIY TSTSCYRILC DHRTNSCLSP CFFFYYFQRE
101: DPPRHDNEEL DRQIALSLAE EAKRPKERNH NKGENDEDLA QAMQDSLNMN PYMPHNPYAP SQALPRGQRV CGGCKHEVGH GHYLSCMGMY WHPHCFRCSS
201: CTHPIRETEF TLLGAEPYHK LCYKELHHPK CDVCLQFIAT NRTGLIEYRA HPFWGQKYCP SHELDRTPRC CSCEKMEPRN TKYMSLGDGR SLCMECLDSA
301: VMDTGECQPL YHSIRDYYEG MNMKLDQQIP MLLVERQALN EAMEGECKGP HHMPETRGLC LSEEQTVSSI LRRPRIGGHR LLDMRTQPQK LTRRCEVTAI
401: LVLYGLPRLL TGSILAHELM HGWLRLKGYR NLSPEVEEGI CQVMSYLWLE SEILPASTRH AQPSTSYASS SSSSSYRPPS SKKGGISHTE KKLGEFFMHQ
501: IANDTSTAYG DGFRTAYKAV NKYGLRQTLN HIRLTGGFPV

Best Arabidopsis Sequence Match ( AT2G39830.1 )
(BLAST)

001: MDSSSSSSSS SPSSSYGVAR VSHISNPCIF GEVGSSSSST YRDKKWKLMK WVSKLFKSGS NGGGSGAHTN HHPPQFQEDE NMVFPLPPSS LDDRSRGARD
101: KEELDRSISL SLADNTKRPH GYGWSMDNNR DFPRPFHGGL NPSSFIPPYE PSYQYRRRQR ICGGCNSDIG SGNYLGCMGT FFHPECFRCH SCGYAITEHE
201: FSLSGTKPYH KLCFKELTHP KCEVCHHFIP TNDAGLIEYR CHPFWNQKYC PSHEYDKTAR CCSCERLESW DVRYYTLEDG RSLCLECMET AITDTGECQP
301: LYHAIRDYYE GMYMKLDQQI PMLLVQREAL NDAIVGEKNG YHHMPETRGL CLSEEQTVTS VLRRPRLGAH RLVGMRTQPQ RLTRKCEVTA ILVLYGLPRL
401: LTGAILAHEL MHGWLRLNGF RNLNPEVEEG ICQVLSYMWL ESEVLSDPST RNLPSTSSVA TSSSSSFSNK KGGKSNVEKK LGEFFKHQIA HDASPAYGGG
501: FRAANAAACK YGLRRTLDHI RLTGTFPL

Arabidopsis Description

DAR2DA1-related protein 2 [Source:TAIR;Acc:AT2G39830]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.