Factsheet for PGSC0003DMT400069927

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g052910.2.1	Tomato	plastid	98.44	87.5
KRG97826	Soybean	cytosol	69.42	70.68
VIT_13s0019g02430.t01	Wine grape	plastid	76.79	68.12
PGSC0003DMT400055872	Potato	cytosol	78.57	66.79
GSMUA_Achr5P07030_001	Banana	cytosol	66.96	63.97
GSMUA_Achr10P...	Banana	mitochondrion	66.52	63.14
KRH31044	Soybean	nucleus	70.98	62.48
CDY07633	Canola	plastid	71.43	62.38
Bra000152.1-P	Field mustard	plastid	70.98	61.87
KRH15044	Soybean	cytosol	69.42	61.71
CDX74829	Canola	cytosol, plastid	71.65	60.91
AT2G39830.2	Thale cress	cytosol, plastid	71.65	60.45
CDY61785	Canola	plastid	69.42	60.27
CDY20486	Canola	cytosol, plastid	70.76	60.27
Bra005011.1-P	Field mustard	cytosol, plastid	66.29	59.28
GSMUA_Achr8P19520_001	Banana	cytosol	62.5	58.95
KRH73095	Soybean	plastid	71.21	56.86
KXG39715	Sorghum	endoplasmic reticulum	63.62	56.1
HORVU4Hr1G060560.7	Barley	cytosol	63.17	55.6
TraesCS4A01G093500.1	Wheat	endoplasmic reticulum	63.17	55.38
TraesCS4D01G211600.2	Wheat	endoplasmic reticulum	63.17	55.38
Os03t0267800-01	Rice	cytosol	61.16	54.69
Zm00001d028567_P001	Maize	mitochondrion	62.05	54.09
TraesCS4B01G210900.3	Wheat	cytosol	63.17	52.41
PGSC0003DMT400043506	Potato	cytosol	55.36	51.03
PGSC0003DMT400026022	Potato	cytosol	56.92	49.42
Zm00001d047837_P003	Maize	cytosol	54.02	47.17
PGSC0003DMT400032779	Potato	cytosol	16.52	35.07
PGSC0003DMT400032774	Potato	cytosol	20.98	32.98

Protein Annotations

EnsemblPlants:PGSC0003DMT400069927	EnsemblPlantsGene:PGSC0003DMG400027192	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:DA1-like	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24209	PANTHER:PTHR24209:SF22	PFAM:PF00412
PFAM:PF12315	PFscan:PS50023	PGSC:PGSC0003DMG400027192	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI0002955635	UniProt:M1CLE5	MapMan:19.2.2.1.7	:	:

Description

Zinc ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027192]

Coordinates

chr5:-:48192235..48199860

Molecular Weight (calculated)

50650.3 Da

IEP (calculated)

7.716

GRAVY (calculated)

-0.546

Length

448 amino acids

Sequence
(BLAST)

001: MVWRAPARSM DDNSRTNKEK EELDRAIALS LAEDLKRPKG YRWRTDQDED LARSLQDNSN SSSYPPKYAP SYAPWEYNPN SYRKCSGCNK DIVSGNYLGC
101: MGTFFHPECF LCRACGVPIT EYEFSLSGNN TYHKSCFKEM THPKCEVCHQ FIPTNGAGLI EYRCHPFWSQ KYCPAHENDN TKRCCSCERL ESRNARYMSL
201: GDGRSLCLEC MESAIMDTGD CQPLYHSIRD YYEGMNMKID QQVPMLLVER HALNEAIEGE KHGLHHMPET RGLCLSEEQT VTSILRRPKI GGRGLIGIRT
301: HPQKLIRRCE VTAILVIYGL PRLLTGAILA HELMHAWLRL KGYRNLTPEV EEGICQVLSH MWLESEVVPG SRNMPSTSTA SSSSTWSSSK KGGTSQAESK
401: LGEFFMHQIA HDASPAYGGG FRAAYAAVNK YGLRSTLDHI RLTGNFPL

Best Arabidopsis Sequence Match ( AT2G39830.1 )
(BLAST)

001: MDSSSSSSSS SPSSSYGVAR VSHISNPCIF GEVGSSSSST YRDKKWKLMK WVSKLFKSGS NGGGSGAHTN HHPPQFQEDE NMVFPLPPSS LDDRSRGARD
101: KEELDRSISL SLADNTKRPH GYGWSMDNNR DFPRPFHGGL NPSSFIPPYE PSYQYRRRQR ICGGCNSDIG SGNYLGCMGT FFHPECFRCH SCGYAITEHE
201: FSLSGTKPYH KLCFKELTHP KCEVCHHFIP TNDAGLIEYR CHPFWNQKYC PSHEYDKTAR CCSCERLESW DVRYYTLEDG RSLCLECMET AITDTGECQP
301: LYHAIRDYYE GMYMKLDQQI PMLLVQREAL NDAIVGEKNG YHHMPETRGL CLSEEQTVTS VLRRPRLGAH RLVGMRTQPQ RLTRKCEVTA ILVLYGLPRL
401: LTGAILAHEL MHGWLRLNGF RNLNPEVEEG ICQVLSYMWL ESEVLSDPST RNLPSTSSVA TSSSSSFSNK KGGKSNVEKK LGEFFKHQIA HDASPAYGGG
501: FRAANAAACK YGLRRTLDHI RLTGTFPL

Arabidopsis Description

DAR2DA1-related protein 2 [Source:TAIR;Acc:AT2G39830]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.