Factsheet for PGSC0003DMT400055872

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g079910.2.1	Tomato	cytosol	96.77	92.9
PGSC0003DMT400069927	Potato	cytosol	66.79	78.57
VIT_13s0019g02430.t01	Wine grape	plastid	69.26	72.28
KRG97826	Soybean	cytosol	54.46	65.23
CDY07633	Canola	plastid	63.38	65.11
Bra005011.1-P	Field mustard	cytosol, plastid	61.67	64.87
Bra000152.1-P	Field mustard	plastid	62.81	64.4
KRH31044	Soybean	nucleus	61.86	64.05
KRH15044	Soybean	cytosol	60.15	62.9
GSMUA_Achr5P07030_001	Banana	cytosol	55.6	62.47
CDY61785	Canola	plastid	60.91	62.21
CDX74829	Canola	cytosol, plastid	61.67	61.67
CDY20486	Canola	cytosol, plastid	61.29	61.41
AT2G39830.2	Thale cress	cytosol, plastid	61.67	61.21
GSMUA_Achr10P...	Banana	mitochondrion	54.65	61.02
GSMUA_Achr8P19520_001	Banana	cytosol	52.37	58.11
KRH73095	Soybean	plastid	60.53	56.86
KXG39715	Sorghum	endoplasmic reticulum	53.32	55.31
TraesCS4A01G093500.1	Wheat	endoplasmic reticulum	51.61	53.23
TraesCS4D01G211600.2	Wheat	endoplasmic reticulum	51.61	53.23
HORVU4Hr1G060560.7	Barley	cytosol	51.23	53.05
Os03t0267800-01	Rice	cytosol	49.91	52.49
Zm00001d028567_P001	Maize	mitochondrion	50.66	51.95
TraesCS4B01G210900.3	Wheat	cytosol	50.47	49.26
PGSC0003DMT400043506	Potato	cytosol	45.35	49.18
Zm00001d047837_P003	Maize	cytosol	47.44	48.73
PGSC0003DMT400026022	Potato	cytosol	45.16	46.12
PGSC0003DMT400032779	Potato	cytosol	14.04	35.07
PGSC0003DMT400032774	Potato	cytosol	18.79	34.74

Protein Annotations

EnsemblPlants:PGSC0003DMT400055872	EnsemblPlantsGene:PGSC0003DMG400021700	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:DA1-like	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24209	PANTHER:PTHR24209:SF22	PFAM:PF00412
PFAM:PF12315	PFscan:PS50023	PGSC:PGSC0003DMG400021700	ScanProsite:PS00478	SEG:seg	SMART:SM00132
SUPFAM:SSF57716	UniParc:UPI00029647A7	UniProt:M1BYP4	MapMan:19.2.2.1.7	:	:

Description

Zinc ion binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021700]

Coordinates

chr3:-:33454899..33459333

Molecular Weight (calculated)

59808.3 Da

IEP (calculated)

7.320

GRAVY (calculated)

-0.471

Length

527 amino acids

Sequence
(BLAST)

001: MSSSTVNQFS QPCIYGNVSQ VPRFDFFESF CYLTYTLLSI SLELRKKISF FDDDMIVGFK AGHFVSSYAE RKSRFMKWLT KIFKGNRGSP RGQQPQFLGD
101: ENMVWRAPAR TLDDRSKASK EKEELDRATA VSLSEDLKRP GYKCRTDNDE DLERSLNHDL SSSSYPPYPP PYPPPYAPSY APWEYNPRSY RICNGCHGDI
201: GSGNYLGCMG TFFHPECFLC RACGYPITEH EIPTNAAGLI EYRCHPFWSQ KYCPSHEHDV TKRCCSCERL EPWNARYVSL GDGRSLCLEC MESAIMDTGD
301: CQPLYHAIRD YYEGMNMKIE QQVPMLLVER QALNEAIEGE KHGFHHMPET RGLCLSEEQT VTSILKRPRM GGREVVGIRT HPQKLTRKCE VTAILVLFGL
401: PRLLTGAILA HELMHAWLRL KGYRNLSLEV EEGICQVLSY MWLESEVMPG SRDMPSTSTA SSSSMSSTKK GVKSGVENKL GEFFMHQIAH DTSPAYGGGF
501: RSANEAVNKY GLRCTLDHIR LTGSFPL

Best Arabidopsis Sequence Match ( AT2G39830.1 )
(BLAST)

001: MDSSSSSSSS SPSSSYGVAR VSHISNPCIF GEVGSSSSST YRDKKWKLMK WVSKLFKSGS NGGGSGAHTN HHPPQFQEDE NMVFPLPPSS LDDRSRGARD
101: KEELDRSISL SLADNTKRPH GYGWSMDNNR DFPRPFHGGL NPSSFIPPYE PSYQYRRRQR ICGGCNSDIG SGNYLGCMGT FFHPECFRCH SCGYAITEHE
201: FSLSGTKPYH KLCFKELTHP KCEVCHHFIP TNDAGLIEYR CHPFWNQKYC PSHEYDKTAR CCSCERLESW DVRYYTLEDG RSLCLECMET AITDTGECQP
301: LYHAIRDYYE GMYMKLDQQI PMLLVQREAL NDAIVGEKNG YHHMPETRGL CLSEEQTVTS VLRRPRLGAH RLVGMRTQPQ RLTRKCEVTA ILVLYGLPRL
401: LTGAILAHEL MHGWLRLNGF RNLNPEVEEG ICQVLSYMWL ESEVLSDPST RNLPSTSSVA TSSSSSFSNK KGGKSNVEKK LGEFFKHQIA HDASPAYGGG
501: FRAANAAACK YGLRRTLDHI RLTGTFPL

Arabidopsis Description

DAR2DA1-related protein 2 [Source:TAIR;Acc:AT2G39830]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.