Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400032774 | Potato | cytosol | 68.25 | 50.53 |
| Solyc01g105180.2.1 | Tomato | cytosol | 85.31 | 46.27 |
| TraesCS2D01G016500.1 | Wheat | cytosol | 34.12 | 32.73 |
| GSMUA_Achr9P07650_001 | Banana | cytosol | 36.02 | 23.6 |
| Zm00001d033289_P001 | Maize | cytosol | 9.0 | 18.45 |
| GSMUA_Achr7P00700_001 | Banana | endoplasmic reticulum | 36.02 | 17.04 |
| PGSC0003DMT400069927 | Potato | cytosol | 35.07 | 16.52 |
| GSMUA_Achr6P28210_001 | Banana | cytosol | 36.97 | 16.35 |
| Os06t0182500-02 | Rice | cytosol | 36.97 | 16.05 |
| PGSC0003DMT400043506 | Potato | cytosol | 36.49 | 15.84 |
| TraesCS2B01G007700.1 | Wheat | cytosol | 36.97 | 15.48 |
| TraesCS2D01G016900.1 | Wheat | cytosol | 36.97 | 15.48 |
| TraesCSU01G007800.1 | Wheat | cytosol | 36.97 | 15.48 |
| Os12t0596800-01 | Rice | plasma membrane | 35.55 | 15.43 |
| Os03t0626600-01 | Rice | plasma membrane | 35.55 | 15.27 |
| GSMUA_Achr4P23130_001 | Banana | mitochondrion | 34.6 | 15.24 |
| EES16286 | Sorghum | cytosol | 36.49 | 15.16 |
| Zm00001d035844_P004 | Maize | cytosol | 36.49 | 15.16 |
| Bra037160.1-P | Field mustard | cytosol | 27.96 | 15.13 |
| Zm00001d033297_P003 | Maize | cytosol, mitochondrion | 35.55 | 14.91 |
| OQU91328 | Sorghum | cytosol, mitochondrion | 35.55 | 14.85 |
| KXG19479 | Sorghum | cytosol | 36.02 | 14.84 |
| TraesCS5A01G060800.1 | Wheat | cytosol | 34.12 | 14.75 |
| TraesCS5D01G072300.1 | Wheat | nucleus | 34.12 | 14.75 |
| PGSC0003DMT400026022 | Potato | cytosol | 36.02 | 14.73 |
| PGSC0003DMT400055872 | Potato | cytosol | 35.07 | 14.04 |
| TraesCS5B01G071300.1 | Wheat | mitochondrion | 34.12 | 13.95 |
| TraesCS4A01G245200.2 | Wheat | cytosol | 35.55 | 13.91 |
| TraesCS4D01G069000.1 | Wheat | cytosol | 36.02 | 13.82 |
| TraesCS4B01G070200.1 | Wheat | cytosol | 35.55 | 13.76 |
| CDX81383 | Canola | cytosol | 30.81 | 13.63 |
| CDY18615 | Canola | cytosol | 21.33 | 12.82 |
| CDX81385 | Canola | cytosol | 27.96 | 12.47 |
| AT5G66640.5 | Thale cress | nucleus | 27.96 | 12.24 |
| Zm00001d030953_P001 | Maize | plastid | 32.23 | 12.12 |
| AT5G66610.2 | Thale cress | cytosol | 33.65 | 12.1 |
| CDY18616 | Canola | nucleus | 28.44 | 11.95 |
| Bra037159.1-P | Field mustard | cytosol | 28.91 | 11.82 |
| CDY47008 | Canola | cytosol, nucleus, peroxisome | 25.59 | 11.79 |
| CDX81381 | Canola | cytosol | 28.44 | 11.67 |
| CDY45247 | Canola | cytosol | 33.65 | 11.51 |
| CDY54205 | Canola | cytosol | 33.65 | 11.11 |
| AT5G66620.1 | Thale cress | cytosol | 33.18 | 10.87 |
| CDY54207 | Canola | extracellular, plasma membrane | 34.6 | 10.86 |
| CDX81382 | Canola | cytosol | 24.17 | 9.83 |
| AT5G66630.1 | Thale cress | cytosol | 32.23 | 9.69 |
| CDY54206 | Canola | cytosol | 18.96 | 9.24 |
| GSMUA_Achr9P07640_001 | Banana | cytosol | 0.47 | 0.64 |
| HORVU7Hr1G118120.1 | Barley | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400032779 | EnsemblPlantsGene:PGSC0003DMG400012584 | InterPro:DA1-like | PANTHER:PTHR24209 | PANTHER:PTHR24209:SF13 | PFAM:PF12315 |
| PGSC:PGSC0003DMG400012584 | UniParc:UPI000295F120 | UniProt:M1AY11 | MapMan:35.1 | : | : |
Description
LIM domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012584]
Coordinates
chr1:+:81902427..81909530
Molecular Weight (calculated)
24592.0 Da
IEP (calculated)
9.512
GRAVY (calculated)
-0.375
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPEDCKPLL DEVHRFFKGL NMKIRYYIPI LLVDQEEIIR IHKKSILGST IYEKFELDAV NYVSKSIQRG ENVEVVKEVE QLPPGRKVRA VLLLYGFPKL
101: AIGSTLAHEL MHAWMRVQGY RGLALNIAEG LSQVMAHKWL EWQSFTGDDY MKGTSEKAQF LRNLKEFMKD GIERRYSEAY GHGFREAKWA VERYGLIYTL
201: KHIARKGKLP E
101: AIGSTLAHEL MHAWMRVQGY RGLALNIAEG LSQVMAHKWL EWQSFTGDDY MKGTSEKAQF LRNLKEFMKD GIERRYSEAY GHGFREAKWA VERYGLIYTL
201: KHIARKGKLP E
001: MGWFNKIFKG SNQRLRVGNN KHNHNVYYDN YPTASHDDEP SAADTDADND EPHHTQEPST SEDNTSNDQE NEDIDRAIAL SLLEENQEQT SISGKYSMPV
101: DEDEQLARAL QESMVVGNSP RHKSGSTYDN GNAYGAGDLY GNGHMYGGGN VYANGDIYYP RPITFQMDFR ICAGCNMEIG HGRFLNCLNS LWHPECFRCY
201: GCSQPISEYE FSTSGNYPFH KACYRERYHP KCDVCSHFIP TNHAGLIEYR AHPFWVQKYC PSHEHDATPR CCSCERMEPR NTRYVELNDG RKLCLECLDS
301: AVMDTMQCQP LYLQIQNFYE GLNMKVEQEV PLLLVERQAL NEAREGEKNG HYHMPETRGL CLSEEQTVST VRKRSKHGTG KWAGNITEPY KLTRQCEVTA
401: ILILFGLPRL LTGSILAHEM MHAWMRLKGF RTLSQDVEEG ICQVMAHKWL DAELAAGSTN SNAASSSSSS QGLKKGPRSQ YERKLGEFFK HQIESDASPV
501: YGDGFRAGRL AVHKYGLRKT LEHIQMTGRF PV
101: DEDEQLARAL QESMVVGNSP RHKSGSTYDN GNAYGAGDLY GNGHMYGGGN VYANGDIYYP RPITFQMDFR ICAGCNMEIG HGRFLNCLNS LWHPECFRCY
201: GCSQPISEYE FSTSGNYPFH KACYRERYHP KCDVCSHFIP TNHAGLIEYR AHPFWVQKYC PSHEHDATPR CCSCERMEPR NTRYVELNDG RKLCLECLDS
301: AVMDTMQCQP LYLQIQNFYE GLNMKVEQEV PLLLVERQAL NEAREGEKNG HYHMPETRGL CLSEEQTVST VRKRSKHGTG KWAGNITEPY KLTRQCEVTA
401: ILILFGLPRL LTGSILAHEM MHAWMRLKGF RTLSQDVEEG ICQVMAHKWL DAELAAGSTN SNAASSSSSS QGLKKGPRSQ YERKLGEFFK HQIESDASPV
501: YGDGFRAGRL AVHKYGLRKT LEHIQMTGRF PV
Arabidopsis Description
DA1DA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WC71]
SUBAcon: [mitochondrion,cytosol]
SUBAcon: [mitochondrion,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.