Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G002700.14 | Barley | cytosol | 95.35 | 8.13 |
| HORVU5Hr1G016350.3 | Barley | cytosol | 69.77 | 6.15 |
| CDY18615 | Canola | cytosol | 46.51 | 5.7 |
| Bra037160.1-P | Field mustard | cytosol | 46.51 | 5.13 |
| HORVU4Hr1G011730.4 | Barley | cytosol | 60.47 | 4.47 |
| CDX81385 | Canola | cytosol | 48.84 | 4.44 |
| HORVU4Hr1G060560.7 | Barley | cytosol | 51.16 | 4.32 |
| CDX81383 | Canola | cytosol | 44.19 | 3.98 |
| CDY47008 | Canola | cytosol, nucleus, peroxisome | 41.86 | 3.93 |
| CDY18616 | Canola | nucleus | 39.53 | 3.39 |
| CDX81382 | Canola | cytosol | 39.53 | 3.28 |
| AT5G66610.2 | Thale cress | cytosol | 44.19 | 3.24 |
| CDY54206 | Canola | cytosol | 32.56 | 3.23 |
| CDX81381 | Canola | cytosol | 37.21 | 3.11 |
| CDY54207 | Canola | extracellular, plasma membrane | 46.51 | 2.98 |
| CDY54205 | Canola | cytosol | 44.19 | 2.97 |
| CDY45247 | Canola | cytosol | 41.86 | 2.92 |
| Bra037159.1-P | Field mustard | cytosol | 34.88 | 2.91 |
| AT5G66620.1 | Thale cress | cytosol | 39.53 | 2.64 |
| AT5G66640.5 | Thale cress | nucleus | 25.58 | 2.28 |
| AT5G66630.1 | Thale cress | cytosol | 37.21 | 2.28 |
| Solyc01g105200.2.1 | Tomato | cytosol | 6.98 | 1.85 |
| PGSC0003DMT400032774 | Potato | cytosol | 2.33 | 0.35 |
| Solyc01g105180.2.1 | Tomato | cytosol | 2.33 | 0.26 |
| HORVU0Hr1G028930.1 | Barley | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400032779 | Potato | cytosol | 0.0 | 0.0 |
| Solyc01g105210.2.1 | Tomato | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G118120.1 | EnsemblPlantsGene:HORVU7Hr1G118120 | Gene3D:2.10.110.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001781 | InterPro:Znf_LIM | PANTHER:PTHR24209 | PANTHER:PTHR24209:SF11 | PFAM:PF00412 | PFscan:PS50023 |
| ScanProsite:PS00478 | SUPFAM:SSF57716 | UniParc:UPI000B475D5F | UniProt:A0A287XYC3 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chrchr7H:+:646792010..646792140
Molecular Weight (calculated)
4830.7 Da
IEP (calculated)
6.475
GRAVY (calculated)
-0.063
Length
43 amino acids
Sequence
(BLAST)
(BLAST)
1: RTCAGCHNEI GHGRFLSCMG AVWHPECFCC HACNQPIYDY EVA
001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGNL KNTPFSLC
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGNL KNTPFSLC
Arabidopsis Description
LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.