Factsheet for GSMUA_Achr6P28210_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P07650_001	Banana	cytosol	62.05	91.93
TraesCS2D01G016500.1	Wheat	cytosol	38.57	83.64
GSMUA_Achr9P07640_001	Banana	cytosol	27.04	82.69
Os06t0182500-02	Rice	cytosol	81.55	80.04
VIT_18s0001g11820.t01	Wine grape	cytosol	80.08	79.75
KRH33082	Soybean	cytosol	14.88	78.89
Zm00001d035844_P004	Maize	cytosol	80.71	75.79
TraesCS2B01G007700.1	Wheat	cytosol	79.25	75.0
KXG19479	Sorghum	cytosol	80.29	74.8
TraesCS2D01G016900.1	Wheat	cytosol	79.04	74.8
HORVU2Hr1G002700.14	Barley	cytosol	79.04	74.8
TraesCSU01G007800.1	Wheat	cytosol	78.83	74.6
VIT_04s0023g01030.t01	Wine grape	cytosol	74.63	72.95
Solyc04g079840.2.1	Tomato	cytosol	74.0	72.63
PGSC0003DMT400043506	Potato	cytosol	74.0	72.63
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	67.3	71.97
PGSC0003DMT400026022	Potato	cytosol	74.84	69.19
Solyc02g089930.2.1	Tomato	cytosol	74.42	68.93
KRH05774	Soybean	cytosol	68.55	68.41
KRH15264	Soybean	cytosol	68.97	68.12
GSMUA_Achr4P23130_001	Banana	mitochondrion	68.13	67.85
KRH08326	Soybean	cytosol	71.91	64.84
CDY41035	Canola	cytosol, mitochondrion	67.71	63.71
Bra016514.1-P	Field mustard	cytosol	61.64	63.64
CDY26685	Canola	cytosol, mitochondrion	67.51	63.51
KRH76891	Soybean	cytosol	71.7	62.64
Bra025725.1-P	Field mustard	cytosol, mitochondrion	67.71	61.29
KRH28579	Soybean	cytosol	72.33	61.28
CDX96669	Canola	cytosol	65.41	61.06
AT1G19270.1	Thale cress	cytosol, mitochondrion	67.92	60.9
CDX83776	Canola	cytosol	64.99	60.67
AT4G36860.3	Thale cress	cytosol	71.91	59.45
KRH69970	Soybean	cytosol	71.49	59.2
GSMUA_Achr5P07030_001	Banana	cytosol	58.07	59.06
GSMUA_Achr10P...	Banana	mitochondrion	58.28	58.9
CDX75603	Canola	mitochondrion	71.07	57.26
CDX69251	Canola	mitochondrion, nucleus	71.28	56.95
Bra011712.1-P	Field mustard	cytosol, mitochondrion	70.86	56.52
VIT_04s0023g01040.t01	Wine grape	plasma membrane	68.76	56.45
GSMUA_Achr8P19520_001	Banana	cytosol	54.72	54.95
KRH26214	Soybean	cytosol	44.03	53.03
Solyc01g105210.2.1	Tomato	extracellular	12.16	47.93
CDY18615	Canola	cytosol	35.01	47.58
Bra037160.1-P	Field mustard	cytosol	38.16	46.67
CDX81385	Canola	cytosol	39.83	40.17
CDX81383	Canola	cytosol	38.99	38.99
PGSC0003DMT400032774	Potato	cytosol	22.64	37.89
CDY47008	Canola	cytosol, nucleus, peroxisome	35.64	37.12
Solyc01g105200.2.1	Tomato	cytosol	12.58	37.04
PGSC0003DMT400032779	Potato	cytosol	16.35	36.97
AT5G66640.5	Thale cress	nucleus	36.9	36.51
CDY18616	Canola	nucleus	37.95	36.06
CDX81381	Canola	cytosol	38.78	35.99
Bra037159.1-P	Field mustard	cytosol	37.11	34.3
CDX81382	Canola	cytosol	37.11	34.1
AT5G66610.2	Thale cress	cytosol	40.46	32.88
AT5G66620.1	Thale cress	cytosol	41.3	30.59
CDY45247	Canola	cytosol	38.78	29.98
Solyc01g105180.2.1	Tomato	cytosol	24.32	29.82
VIT_18s0041g02180.t01	Wine grape	mitochondrion	42.98	29.71
CDY54205	Canola	cytosol	38.57	28.8
CDY54206	Canola	cytosol	25.16	27.71
CDY54207	Canola	extracellular, plasma membrane	37.95	26.93
AT5G66630.1	Thale cress	cytosol	37.11	25.21
VIT_18s0041g02190.t01	Wine grape	cytosol	19.92	22.73

Protein Annotations

MapMan:19.2.2.1.7	Gene3D:2.10.110.10	ncoils:Coil	InterPro:DA1-like	GO:GO:0000003	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008285	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0040007	GO:GO:0043130	GO:GO:0046621
GO:GO:0046872	GO:GO:0048317	GO:GO:0048482	GO:GO:1900057	EnsemblPlantsGene:GSMUA_Achr6G28210_001	EnsemblPlants:GSMUA_Achr6P28210_001
EnsemblPlants:GSMUA_Achr6T28210_001	InterPro:IPR001781	InterPro:IPR003903	UniProt:M0TAW6	PFAM:PF00412	PFAM:PF12315
ScanProsite:PS00478	PFscan:PS50023	PFscan:PS50330	PANTHER:PTHR24209	PANTHER:PTHR24209:SF11	SMART:SM00132
SMART:SM00726	SUPFAM:SSF57716	InterPro:UIM_dom	UniParc:UPI000294E10E	InterPro:Znf_LIM	SEG:seg

Description

Protein DA1-related 1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G28210_001]

Coordinates

chr6:+:28601477..28610568

Molecular Weight (calculated)

54238.2 Da

IEP (calculated)

5.904

GRAVY (calculated)

-0.533

Length

477 amino acids

Sequence
(BLAST)

001: MGWLSKIFKG SSHRISEGQY HEKYRDDGVW NEPSNSLDTL SEYENDDIDH AIALSLSEEE QKRAKAIENA STLEEDELLA RALQESLNAD SPPRENGHAY
101: QPVPFLFSSG FRICAGCNTE IGHGRFLSCM DAYWHPECFR CHACNQPISD YEFSMSGNYP YHKSCYKELY HPKCDVCKQF IPTNMNGLIE YRAHPFWMQK
201: YCPSHEMDGT PRCCSCERME PRDIKYVTLD DGRKLCLECL DSAIMDTNEC QPLYLDIQEF YEGLNMKIEQ QVPLLLVERQ ALNEAMEGEK NGHHHLPETR
301: GLCLSEEQTV STILRRPRIG AGNKIMNMIT EPYRLTRRCE VTAILILYGL PRLLTGSILA HEMMHAWLRL KGYRSLSQEV EEGICQVLAH MWLDSEIISG
401: SGSNVASTSS SSSASTSSKK GSRSQFERKL GDFFKHQIES DTSPAYGDGF RAGNQAVLRY GLRPTLDHIK LTGTFPC

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.