Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75603 | Canola | mitochondrion | 87.52 | 85.3 |
| Bra011712.1-P | Field mustard | cytosol, mitochondrion | 88.04 | 84.95 |
| CDX69251 | Canola | mitochondrion, nucleus | 87.17 | 84.25 |
| KRH33082 | Soybean | cytosol | 12.48 | 80.0 |
| GSMUA_Achr9P07650_001 | Banana | cytosol | 42.81 | 76.71 |
| TraesCS2D01G016500.1 | Wheat | cytosol | 29.12 | 76.36 |
| GSMUA_Achr6P28210_001 | Banana | cytosol | 59.45 | 71.91 |
| Os06t0182500-02 | Rice | cytosol | 59.27 | 70.37 |
| VIT_04s0023g01030.t01 | Wine grape | cytosol | 59.45 | 70.29 |
| PGSC0003DMT400026022 | Potato | cytosol | 60.14 | 67.25 |
| KRH08326 | Soybean | cytosol | 61.53 | 67.11 |
| Solyc02g089930.2.1 | Tomato | cytosol | 59.62 | 66.8 |
| Zm00001d035844_P004 | Maize | cytosol | 58.58 | 66.54 |
| TraesCS2B01G007700.1 | Wheat | cytosol | 58.06 | 66.47 |
| TraesCS2D01G016900.1 | Wheat | cytosol | 57.89 | 66.27 |
| KRH76891 | Soybean | cytosol | 62.56 | 66.12 |
| TraesCSU01G007800.1 | Wheat | cytosol | 57.71 | 66.07 |
| GSMUA_Achr7P00700_001 | Banana | endoplasmic reticulum | 50.78 | 65.7 |
| KXG19479 | Sorghum | cytosol | 58.23 | 65.62 |
| GSMUA_Achr4P23130_001 | Banana | mitochondrion | 53.03 | 63.88 |
| KRH28579 | Soybean | cytosol | 62.22 | 63.77 |
| KRH69970 | Soybean | cytosol | 61.87 | 61.98 |
| Os03t0626600-01 | Rice | plasma membrane | 51.47 | 60.49 |
| TraesCS5A01G060800.1 | Wheat | cytosol | 50.61 | 59.84 |
| TraesCS5D01G072300.1 | Wheat | nucleus | 50.61 | 59.84 |
| Os12t0596800-01 | Rice | plasma membrane | 50.09 | 59.47 |
| EES16286 | Sorghum | cytosol | 51.47 | 58.46 |
| OQU91328 | Sorghum | cytosol, mitochondrion | 50.95 | 58.22 |
| Zm00001d033297_P003 | Maize | cytosol, mitochondrion | 50.43 | 57.85 |
| TraesCS5B01G071300.1 | Wheat | mitochondrion | 50.61 | 56.59 |
| KRH26214 | Soybean | cytosol | 38.65 | 56.31 |
| AT1G19270.1 | Thale cress | cytosol, mitochondrion | 50.61 | 54.89 |
| Zm00001d033289_P001 | Maize | cytosol | 9.71 | 54.37 |
| VIT_04s0023g01040.t01 | Wine grape | plasma membrane | 54.42 | 54.04 |
| TraesCS4A01G245200.2 | Wheat | cytosol | 48.87 | 52.32 |
| TraesCS4B01G070200.1 | Wheat | cytosol | 49.22 | 52.11 |
| TraesCS4D01G069000.1 | Wheat | cytosol | 49.05 | 51.45 |
| GSMUA_Achr9P07640_001 | Banana | cytosol | 13.0 | 48.08 |
| AT2G39830.2 | Thale cress | cytosol, plastid | 43.67 | 47.46 |
| Zm00001d030953_P001 | Maize | plastid | 45.58 | 46.88 |
| AT5G66640.5 | Thale cress | nucleus | 32.06 | 38.38 |
| AT5G66610.2 | Thale cress | cytosol | 35.7 | 35.09 |
| AT5G66620.1 | Thale cress | cytosol | 34.14 | 30.59 |
| AT5G66630.1 | Thale cress | cytosol | 32.93 | 27.07 |
Protein Annotations
| MapMan:19.2.2.1.7 | Gene3D:2.10.110.10 | EntrezGene:829839 | UniProt:A0A1P8B494 | ProteinID:ANM66428.1 | ArrayExpress:AT4G36860 |
| EnsemblPlantsGene:AT4G36860 | RefSeq:AT4G36860 | TAIR:AT4G36860 | RefSeq:AT4G36860-TAIR-G | EnsemblPlants:AT4G36860.3 | ncoils:Coil |
| InterPro:DA1-like | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR001781 | InterPro:IPR003903 |
| RefSeq:NP_001328324.1 | PFAM:PF00412 | PFAM:PF12315 | ScanProsite:PS00478 | PFscan:PS50023 | PFscan:PS50330 |
| PANTHER:PTHR24209 | SMART:SM00132 | SMART:SM00726 | SUPFAM:SSF57716 | InterPro:UIM_dom | UniParc:UPI000848F83B |
| InterPro:Znf_LIM | SEG:seg | : | : | : | : |
Description
LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
Coordinates
chr4:-:17358371..17362114
Molecular Weight (calculated)
66210.6 Da
IEP (calculated)
5.029
GRAVY (calculated)
-0.589
Length
577 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAVSE LYCFLVHFEL KIKGFLEFLI QEGSDFDKEE IECAIALSLS EQEHVIPQDD KGKKIIEYKS
101: ETEEDDDDDE DEDEEYMRAQ LEAAEEEERR VAQAQIEEEE KRRAEAQLEE TEKLLAKARL EEEEMRRSKA QLEEDELLAK ALQESMNVGS PPRYDPGNIL
201: QPYPFLIPSS HRICVGCQAE IGHGRFLSCM GGVWHPECFC CNACDKPIID YEFSMSGNRP YHKLCYKEQH HPKCDVCHNF IPTNPAGLIE YRAHPFWMQK
301: YCPSHERDGT PRCCSCERME PKDTKYLILD DGRKLCLECL DSAIMDTHEC QPLYLEIREF YEGLHMKVEQ QIPMLLVERS ALNEAMEGEK HGHHHLPETR
401: GLCLSEEQTV TTVLRRPRIG AGYKLIDMIT EPCRLIRRCE VTAILILYGL PRLLTGSILA HEMMHAWLRL NGYPNLRPEV EEGICQVLAH MWLESETYAG
501: STLVDIASSS SSAVVSASSK KGERSDFEKK LGEFFKHQIE SDSSSAYGDG FRQGNQAVLK HGLRRTLDHI RLTGTFP
101: ETEEDDDDDE DEDEEYMRAQ LEAAEEEERR VAQAQIEEEE KRRAEAQLEE TEKLLAKARL EEEEMRRSKA QLEEDELLAK ALQESMNVGS PPRYDPGNIL
201: QPYPFLIPSS HRICVGCQAE IGHGRFLSCM GGVWHPECFC CNACDKPIID YEFSMSGNRP YHKLCYKEQH HPKCDVCHNF IPTNPAGLIE YRAHPFWMQK
301: YCPSHERDGT PRCCSCERME PKDTKYLILD DGRKLCLECL DSAIMDTHEC QPLYLEIREF YEGLHMKVEQ QIPMLLVERS ALNEAMEGEK HGHHHLPETR
401: GLCLSEEQTV TTVLRRPRIG AGYKLIDMIT EPCRLIRRCE VTAILILYGL PRLLTGSILA HEMMHAWLRL NGYPNLRPEV EEGICQVLAH MWLESETYAG
501: STLVDIASSS SSAVVSASSK KGERSDFEKK LGEFFKHQIE SDSSSAYGDG FRQGNQAVLK HGLRRTLDHI RLTGTFP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.