Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH28579 | Soybean | cytosol | 95.79 | 92.9 |
KRH33082 | Soybean | cytosol | 13.37 | 81.11 |
KRH08326 | Soybean | cytosol | 77.11 | 79.58 |
TraesCS2D01G016500.1 | Wheat | cytosol | 30.4 | 75.45 |
GSMUA_Achr9P07650_001 | Banana | cytosol | 44.32 | 75.16 |
VIT_04s0023g01030.t01 | Wine grape | cytosol | 66.12 | 73.98 |
KRH69970 | Soybean | cytosol | 77.11 | 73.09 |
GSMUA_Achr6P28210_001 | Banana | cytosol | 62.64 | 71.7 |
PGSC0003DMT400026022 | Potato | cytosol | 66.12 | 69.96 |
Solyc02g089930.2.1 | Tomato | cytosol | 65.93 | 69.9 |
Os06t0182500-02 | Rice | cytosol | 61.9 | 69.55 |
KRH26214 | Soybean | cytosol | 50.37 | 69.44 |
GSMUA_Achr7P00700_001 | Banana | endoplasmic reticulum | 54.58 | 66.82 |
Zm00001d035844_P004 | Maize | cytosol | 61.36 | 65.94 |
TraesCS2B01G007700.1 | Wheat | cytosol | 60.62 | 65.67 |
KXG19479 | Sorghum | cytosol | 61.54 | 65.62 |
TraesCS2D01G016900.1 | Wheat | cytosol | 60.44 | 65.48 |
TraesCSU01G007800.1 | Wheat | cytosol | 60.44 | 65.48 |
KRH05774 | Soybean | cytosol | 56.59 | 64.64 |
KRH15264 | Soybean | cytosol | 55.86 | 63.15 |
AT4G36860.3 | Thale cress | cytosol | 66.12 | 62.56 |
GSMUA_Achr4P23130_001 | Banana | mitochondrion | 54.58 | 62.21 |
CDX75603 | Canola | mitochondrion | 67.4 | 62.16 |
Os03t0626600-01 | Rice | plasma membrane | 55.86 | 62.12 |
Os12t0596800-01 | Rice | plasma membrane | 55.13 | 61.93 |
CDX69251 | Canola | mitochondrion, nucleus | 67.4 | 61.64 |
Bra011712.1-P | Field mustard | cytosol, mitochondrion | 67.4 | 61.54 |
OQU91328 | Sorghum | cytosol, mitochondrion | 56.41 | 60.99 |
TraesCS5D01G072300.1 | Wheat | nucleus | 53.85 | 60.25 |
TraesCS5A01G060800.1 | Wheat | cytosol | 53.85 | 60.25 |
EES16286 | Sorghum | cytosol | 55.86 | 60.04 |
Zm00001d033297_P003 | Maize | cytosol, mitochondrion | 54.95 | 59.64 |
Zm00001d033289_P001 | Maize | cytosol | 10.81 | 57.28 |
TraesCS5B01G071300.1 | Wheat | mitochondrion | 53.85 | 56.98 |
VIT_04s0023g01040.t01 | Wine grape | plasma membrane | 58.97 | 55.42 |
TraesCS4A01G245200.2 | Wheat | cytosol | 54.03 | 54.73 |
TraesCS4B01G070200.1 | Wheat | cytosol | 54.21 | 54.31 |
KRG97826 | Soybean | cytosol | 43.59 | 54.09 |
TraesCS4D01G069000.1 | Wheat | cytosol | 54.03 | 53.64 |
GSMUA_Achr9P07640_001 | Banana | cytosol | 15.02 | 52.56 |
KRH15044 | Soybean | cytosol | 45.6 | 49.4 |
KRH31044 | Soybean | nucleus | 45.05 | 48.33 |
Zm00001d030953_P001 | Maize | plastid | 49.27 | 47.95 |
KRH73095 | Soybean | plastid | 46.15 | 44.92 |
Protein Annotations
EntrezGene:100817969 | MapMan:19.2.2.1.7 | Gene3D:2.10.110.10 | EMBL:ACUP02000645 | ncoils:Coil | InterPro:DA1-like |
EnsemblPlantsGene:GLYMA_01G179800 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | UniProt:I1J903 | InterPro:IPR001781 |
InterPro:IPR003903 | EMBL:KR349314 | ProteinID:KRH76890.1 | EnsemblPlants:KRH76891 | ProteinID:KRH76891 | ProteinID:KRH76891.1 |
ProteinID:KRH76892.1 | PFAM:PF00412 | PFAM:PF12315 | ScanProsite:PS00478 | PFscan:PS50023 | PFscan:PS50330 |
PANTHER:PTHR24209 | PANTHER:PTHR24209:SF12 | SMART:SM00132 | SMART:SM00726 | SUPFAM:SSF57716 | InterPro:UIM_dom |
UniParc:UPI0002336ECF | InterPro:Znf_LIM | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:51567436..51575214
Molecular Weight (calculated)
62592.0 Da
IEP (calculated)
5.473
GRAVY (calculated)
-0.659
Length
546 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWFTKLLKG SDYKILRGQY HGKYGEDRIW DNHHSSMDDL TDIEKEDIDR AIALSLSEED HKGKKVVDYD SQSEDEELCK IDDEEDEHLV KVHLEEEERL
101: AKIQQEEEER LAKIQQDERL AKIQQEDERL AKAQLEEDEQ LARAIQESLK IGSPPRYDND SSILSFPHLF PPGYRICAGC KTEIGQGRFL SCMGGVWHPE
201: CFCCHACHLP ITDYEFSMSS NRPYHKACYR EKHHPRCDVC KNFIPTNSSG LIEYRAHPFW LQKYCPSHEL DGTPRCCSCE RMESRDTKYL LLDDGRKLCL
301: ECLDSSIMDT HECQPLYLEI QEFYEGLNMK LEQQIPMLLV ERQALNEAME GEKNGHHHLP ETRGLCLSEE QTVTTISRRP RIGAGYRAID MITEPYRLIR
401: HCEVTAILVL YGLPRLLTGS ILAHEMMHAW LRLKGYPNLS PEVEEGICQV LAHMWLESEL YSGTGNDGAS SSASSSSSSS PSSSVSTKKG KRSDFEKKLG
501: EFFKHQIESD TSSAYGDGFR LGNQAMLKYG LKRTLDHIHM TGSFPY
101: AKIQQEEEER LAKIQQDERL AKIQQEDERL AKAQLEEDEQ LARAIQESLK IGSPPRYDND SSILSFPHLF PPGYRICAGC KTEIGQGRFL SCMGGVWHPE
201: CFCCHACHLP ITDYEFSMSS NRPYHKACYR EKHHPRCDVC KNFIPTNSSG LIEYRAHPFW LQKYCPSHEL DGTPRCCSCE RMESRDTKYL LLDDGRKLCL
301: ECLDSSIMDT HECQPLYLEI QEFYEGLNMK LEQQIPMLLV ERQALNEAME GEKNGHHHLP ETRGLCLSEE QTVTTISRRP RIGAGYRAID MITEPYRLIR
401: HCEVTAILVL YGLPRLLTGS ILAHEMMHAW LRLKGYPNLS PEVEEGICQV LAHMWLESEL YSGTGNDGAS SSASSSSSSS PSSSVSTKKG KRSDFEKKLG
501: EFFKHQIESD TSSAYGDGFR LGNQAMLKYG LKRTLDHIHM TGSFPY
001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP
Arabidopsis Description
LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.