Factsheet for Solyc02g089930.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026022	Potato	cytosol	97.67	97.48
TraesCS2D01G016500.1	Wheat	cytosol	33.79	79.09
GSMUA_Achr9P07650_001	Banana	cytosol	48.35	77.33
VIT_04s0023g01030.t01	Wine grape	cytosol	71.26	75.2
KRH33082	Soybean	cytosol	13.01	74.44
GSMUA_Achr6P28210_001	Banana	cytosol	68.93	74.42
Os06t0182500-02	Rice	cytosol	68.54	72.63
Solyc04g079840.2.1	Tomato	cytosol	65.83	69.75
TraesCS2B01G007700.1	Wheat	cytosol	67.57	69.05
Zm00001d035844_P004	Maize	cytosol	67.96	68.9
TraesCS2D01G016900.1	Wheat	cytosol	67.38	68.85
KXG19479	Sorghum	cytosol	68.35	68.75
TraesCSU01G007800.1	Wheat	cytosol	67.18	68.65
KRH08326	Soybean	cytosol	69.13	67.3
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	58.25	67.26
KRH76891	Soybean	cytosol	69.9	65.93
KRH28579	Soybean	cytosol	70.29	64.3
GSMUA_Achr4P23130_001	Banana	mitochondrion	58.25	62.63
Os03t0626600-01	Rice	plasma membrane	59.61	62.53
TraesCS5A01G060800.1	Wheat	cytosol	59.22	62.5
TraesCS5D01G072300.1	Wheat	nucleus	59.22	62.5
Os12t0596800-01	Rice	plasma membrane	58.64	62.14
KRH69970	Soybean	cytosol	68.74	61.46
EES16286	Sorghum	cytosol	59.61	60.43
AT4G36860.3	Thale cress	cytosol	66.8	59.62
TraesCS5B01G071300.1	Wheat	mitochondrion	59.22	59.11
CDX75603	Canola	mitochondrion	67.38	58.61
CDX69251	Canola	mitochondrion, nucleus	67.18	57.96
Bra011712.1-P	Field mustard	cytosol, mitochondrion	67.18	57.86
OQU91328	Sorghum	cytosol, mitochondrion	56.7	57.82
Zm00001d033297_P003	Maize	cytosol, mitochondrion	56.12	57.46
VIT_04s0023g01040.t01	Wine grape	plasma membrane	63.88	56.63
Zm00001d033289_P001	Maize	cytosol	11.26	56.31
KRH26214	Soybean	cytosol	42.33	55.05
TraesCS4A01G245200.2	Wheat	cytosol	56.5	53.99
GSMUA_Achr9P07640_001	Banana	cytosol	16.31	53.85
TraesCS4B01G070200.1	Wheat	cytosol	56.5	53.39
TraesCS4D01G069000.1	Wheat	cytosol	56.31	52.73
Solyc05g052910.2.1	Tomato	plastid	50.49	51.59
Zm00001d030953_P001	Maize	plastid	52.23	47.95
Solyc03g079910.2.1	Tomato	cytosol	49.51	46.45
Solyc01g105210.2.1	Tomato	extracellular	10.68	45.45
Solyc01g105200.2.1	Tomato	cytosol	11.84	37.65
Solyc01g105180.2.1	Tomato	cytosol	21.36	28.28

Protein Annotations

MapMan:19.2.2.1.7	Gene3D:2.10.110.10	InterPro:DA1-like	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR001781	InterPro:IPR003903	UniProt:K4BCE4	PFAM:PF00412	PFAM:PF12315	ScanProsite:PS00478
PFscan:PS50023	PFscan:PS50330	PANTHER:PTHR24209	PANTHER:PTHR24209:SF11	SMART:SM00132	SMART:SM00726
SUPFAM:SSF57716	EnsemblPlantsGene:Solyc02g089930.2	EnsemblPlants:Solyc02g089930.2.1	InterPro:UIM_dom	UniParc:UPI0002768E61	InterPro:Znf_LIM
SEG:seg	:	:	:	:	:

Description

Protein DA1-related 1 [Source:Projected from Arabidopsis thaliana (AT4G36860) UniProtKB/Swiss-Prot;Acc:Q8W4F0]

Coordinates

chr2:-:51603025..51607286

Molecular Weight (calculated)

57758.6 Da

IEP (calculated)

5.614

GRAVY (calculated)

-0.608

Length

515 amino acids

Sequence
(BLAST)

001: MGWLEKIFGG STHRISGGQY HSGYEGAQYH GGYDGGQYHS GHEGEQYHGG YQDSTTWDGP TTSVDESSDF DKEEIDRAIA LSLAEEDQKG KKVIESEPHL
101: EEDEALAKAL QESLNVESSP PPPPPRYDYG SPFPSLSYSF PYGYRVCAGC NAEIGHGRYL SCMGAVWHPE CFRCHGCNQP ISDYEFSMSD NRPYHKSCYK
201: EQHHPKCDVC KSFIPTNPAG LIEYRAHPFW LQKYCPSHET DGTPRCCSCE RMEPVDARYL ILEDGRKLCL ECLDSSIMDT HECQPLYLEI QEFYEGLNMK
301: VEQQIPLLLV ERQALNEAME GEKNGHHHMP ETRGLCLSEE QTISSISRRP RIGGYRILDM FTEPYRLIRH CEVTAILILY GLPRLLTGSI LAHEMMHAWL
401: RLKGYPSLSP EVEEGICQVL AHMWLDSEII AGSGSTSTSA STSASSSSSS SPSTSSKKGK RSDFEKKLGD FFKHQIESDT SAAYGDGFRE GNKAVLKYGL
501: KTTLDHIRLT GTYPC

Best Arabidopsis Sequence Match ( AT4G36860.1 )
(BLAST)

001: MGWLTKILKG SSHKFSDGQC NGRYREDRNL EGPRYSAEGS DFDKEEIECA IALSLSEQEH VIPQDDKGKK IIEYKSETEE DDDDDEDEDE EYMRAQLEAA
101: EEEERRVAQA QIEEEEKRRA EAQLEETEKL LAKARLEEEE MRRSKAQLEE DELLAKALQE SMNVGSPPRY DPGNILQPYP FLIPSSHRIC VGCQAEIGHG
201: RFLSCMGGVW HPECFCCNAC DKPIIDYEFS MSGNRPYHKL CYKEQHHPKC DVCHNFIPTN PAGLIEYRAH PFWMQKYCPS HERDGTPRCC SCERMEPKDT
301: KYLILDDGRK LCLECLDSAI MDTHECQPLY LEIREFYEGL HMKVEQQIPM LLVERSALNE AMEGEKHGHH HLPETRGLCL SEEQTVTTVL RRPRIGAGYK
401: LIDMITEPCR LIRRCEVTAI LILYGLPRLL TGSILAHEMM HAWLRLNGYP NLRPEVEEGI CQVLAHMWLE SETYAGSTLV DIASSSSSAV VSASSKKGER
501: SDFEKKLGEF FKHQIESDSS SAYGDGFRQG NQAVLKHGLR RTLDHIRLTG TFP

Arabidopsis Description

LIM domain-containing protein [Source:TAIR;Acc:AT4G36860]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.