Factsheet for Solyc05g052910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069927	Potato	cytosol	87.5	98.44
Solyc03g079910.2.1	Tomato	cytosol	82.74	75.96
VIT_13s0019g02430.t01	Wine grape	plastid	75.79	75.64
KRG97826	Soybean	cytosol	61.51	70.45
KRH31044	Soybean	nucleus	68.85	68.17
CDY07633	Canola	plastid	68.65	67.45
Bra000152.1-P	Field mustard	plastid	68.25	66.93
KRH15044	Soybean	cytosol	66.67	66.67
GSMUA_Achr5P07030_001	Banana	cytosol	61.11	65.67
CDX74829	Canola	cytosol, plastid	68.65	65.65
AT2G39830.2	Thale cress	cytosol, plastid	68.45	64.97
GSMUA_Achr10P...	Banana	mitochondrion	60.71	64.83
CDY20486	Canola	cytosol, plastid	67.66	64.83
CDY61785	Canola	plastid	66.27	64.73
Bra005011.1-P	Field mustard	cytosol, plastid	63.89	64.27
GSMUA_Achr8P19520_001	Banana	cytosol	57.14	60.63
KRH73095	Soybean	plastid	66.47	59.71
KXG39715	Sorghum	endoplasmic reticulum	58.13	57.68
HORVU4Hr1G060560.7	Barley	cytosol	57.34	56.78
TraesCS4A01G093500.1	Wheat	endoplasmic reticulum	57.34	56.56
TraesCS4D01G211600.2	Wheat	endoplasmic reticulum	57.34	56.56
Os03t0267800-01	Rice	cytosol	55.56	55.89
Zm00001d028567_P001	Maize	mitochondrion	56.94	55.84
TraesCS4B01G210900.3	Wheat	cytosol	56.75	52.96
Solyc04g079840.2.1	Tomato	cytosol	50.2	52.06
Solyc02g089930.2.1	Tomato	cytosol	51.59	50.49
Zm00001d047837_P003	Maize	cytosol	49.6	48.73
Solyc01g105210.2.1	Tomato	extracellular	10.91	45.45
Solyc01g105200.2.1	Tomato	cytosol	9.92	30.86
Solyc01g105180.2.1	Tomato	cytosol	20.24	26.22

Protein Annotations

EnsemblPlants:Solyc05g052910.2.1	EnsemblPlantsGene:Solyc05g052910.2	Gene3D:2.10.110.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:DA1-like	InterPro:IPR001781	InterPro:Znf_LIM	PANTHER:PTHR24209	PANTHER:PTHR24209:SF22	PFAM:PF00412
PFAM:PF12315	PFscan:PS50023	ScanProsite:PS00478	SEG:seg	SMART:SM00132	SUPFAM:SSF57716
UniParc:UPI00027660E0	UniProt:K4C1X1	MapMan:19.2.2.1.7	:	:	:

Description

No Description!

Coordinates

chr5:-:63079973..63086733

Molecular Weight (calculated)

56964.7 Da

IEP (calculated)

8.021

GRAVY (calculated)

-0.584

Length

504 amino acids

Sequence
(BLAST)

001: MSSSSVNHIS QPCIYGHFVS STTERKSRLM KWLSKLFKGG GSGNRGQQPQ FLGDENMVWR APARSMDDNS RTNKEKEELD RAIALSLAED LRRPKGYRWR
101: TDQDEDLARS LQDNSNSSSH PPKYAPSYAP WEYNPNSYRK CSGCNKDIIS GNYLGCMETF FHPECFLCRA CGVPITEYEF SLSGNNTYHK SCFKEMTHPK
201: CEVCHQFIPT NGAGLIEYRC HPFWSQKYCP AHENDNTKRC CSCERLESRN ARYMSLGDGR SLCLECMESA IMDTGDCQPL YHSIRDYYEG MNMKIDQQVP
301: MLLVERHALN EAIEGEKHGL HHMPETRGLC LSEEQTVTSI LRRPKFGGRG LIGIRTHPQK LIRRCEVTAI LVIYGLPRLL TGAILAHELM HAWLRLKGYR
401: NLTPEVEEGI CQVLSHMWLE SEVVPGSRNM PSTSTASSSS TWSSSKKGGK SQAESKLGEF FMHQIAHDAS PAYGGGFRAA YAAVNKYGLR STLDHIHLTG
501: NFPL

Best Arabidopsis Sequence Match ( AT2G39830.1 )
(BLAST)

001: MDSSSSSSSS SPSSSYGVAR VSHISNPCIF GEVGSSSSST YRDKKWKLMK WVSKLFKSGS NGGGSGAHTN HHPPQFQEDE NMVFPLPPSS LDDRSRGARD
101: KEELDRSISL SLADNTKRPH GYGWSMDNNR DFPRPFHGGL NPSSFIPPYE PSYQYRRRQR ICGGCNSDIG SGNYLGCMGT FFHPECFRCH SCGYAITEHE
201: FSLSGTKPYH KLCFKELTHP KCEVCHHFIP TNDAGLIEYR CHPFWNQKYC PSHEYDKTAR CCSCERLESW DVRYYTLEDG RSLCLECMET AITDTGECQP
301: LYHAIRDYYE GMYMKLDQQI PMLLVQREAL NDAIVGEKNG YHHMPETRGL CLSEEQTVTS VLRRPRLGAH RLVGMRTQPQ RLTRKCEVTA ILVLYGLPRL
401: LTGAILAHEL MHGWLRLNGF RNLNPEVEEG ICQVLSYMWL ESEVLSDPST RNLPSTSSVA TSSSSSFSNK KGGKSNVEKK LGEFFKHQIA HDASPAYGGG
501: FRAANAAACK YGLRRTLDHI RLTGTFPL

Arabidopsis Description

DAR2DA1-related protein 2 [Source:TAIR;Acc:AT2G39830]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.