Factsheet for TraesCS4A01G093500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G211600.2	Wheat	endoplasmic reticulum	99.8	99.8
HORVU4Hr1G060560.7	Barley	cytosol	95.69	96.07
TraesCS4B01G210900.3	Wheat	cytosol	93.93	88.89
KXG39715	Sorghum	endoplasmic reticulum	86.11	86.61
Os03t0267800-01	Rice	cytosol	81.8	83.43
Zm00001d028567_P001	Maize	mitochondrion	78.08	77.63
Zm00001d047837_P003	Maize	cytosol	71.62	71.34
GSMUA_Achr10P...	Banana	mitochondrion	63.99	69.28
GSMUA_Achr5P07030_001	Banana	cytosol	63.41	69.08
GSMUA_Achr8P19520_001	Banana	cytosol	59.88	64.42
PGSC0003DMT400069927	Potato	cytosol	55.38	63.17
KRG97826	Soybean	cytosol	52.64	61.14
VIT_13s0019g02430.t01	Wine grape	plastid	57.73	58.42
Solyc05g052910.2.1	Tomato	plastid	56.56	57.34
KRH15044	Soybean	cytosol	56.36	57.14
KRH31044	Soybean	nucleus	54.4	54.62
CDY07633	Canola	plastid	54.6	54.39
Bra000152.1-P	Field mustard	plastid	54.4	54.09
CDY61785	Canola	plastid	54.6	54.07
CDX74829	Canola	cytosol, plastid	54.01	52.37
Solyc03g079910.2.1	Tomato	cytosol	56.16	52.28
KRH73095	Soybean	plastid	57.34	52.23
AT2G39830.2	Thale cress	cytosol, plastid	54.21	52.17
CDY20486	Canola	cytosol, plastid	53.62	52.09
PGSC0003DMT400055872	Potato	cytosol	53.23	51.61
Bra005011.1-P	Field mustard	cytosol, plastid	50.29	51.3
TraesCS5A01G060800.1	Wheat	cytosol	47.16	49.39
TraesCS4A01G245200.2	Wheat	cytosol	47.95	45.45

Protein Annotations

EnsemblPlants:TraesCS4A01G093500.1	EnsemblPlantsGene:TraesCS4A01G093500	Gene3D:2.10.110.10	InterPro:DA1-like	InterPro:IPR001781	InterPro:Znf_LIM
PANTHER:PTHR24209	PANTHER:PTHR24209:SF21	PFAM:PF00412	PFAM:PF12315	PFscan:PS50023	ScanProsite:PS00478
SEG:seg	SignalP:SignalP-noTM	SMART:SM00132	SUPFAM:SSF57716	TIGR:cd09396	MapMan:19.2.2.1.7

Description

No Description!

Coordinates

chr4A:-:100964707..100967784

Molecular Weight (calculated)

58359.1 Da

IEP (calculated)

8.214

GRAVY (calculated)

-0.619

Length

511 amino acids

Sequence
(BLAST)

001: MLATQAISCG VLSLCFLILF NAERRSSFMK WLCNFLKGTK PVESNHRRRP RVTAGEESSL WQQEPVRPKR EDPPRHDNEE LDRQIALSLA EEAKRTKERN
101: HNKGENDEDL AKAMQDSLNM NPYMPHNPYA PSQALPRGQR VCGGCKHEVG HGHYLSCMGM YWHPQCFRCS SCTHPIRETE FTLLGAEPYH KLCYKELHHP
201: KCDVCLQFIA TNRTGLIEYR AHPFWGQKYC PSHELDRTPR CCSCEKMEPR NTKYMSLGDG RSLCMECLDS AVMDTGECQP LYHSIRDYYE GMNMKLDQQI
301: PMLLVERQAL NEAMEGECKG PHHMPETRGL CLSEEQTVSS ILRRPRIGGH RLLDMRTQPQ KLTRRCEVTA ILVLYGLPRL LTGSILAHEL MHGWLRLKGY
401: RNLSPEVEEG ICQVMSYLWL ESEILPASTR HAQPSTSYAS SSSSSSYRPP SSKKGGISHT EKKLGEFFMH QIANDTSTAY GDGFRTAYKA VNKYGLRQTL
501: NHIRLTGGFP V

Best Arabidopsis Sequence Match ( AT2G39830.1 )
(BLAST)

001: MDSSSSSSSS SPSSSYGVAR VSHISNPCIF GEVGSSSSST YRDKKWKLMK WVSKLFKSGS NGGGSGAHTN HHPPQFQEDE NMVFPLPPSS LDDRSRGARD
101: KEELDRSISL SLADNTKRPH GYGWSMDNNR DFPRPFHGGL NPSSFIPPYE PSYQYRRRQR ICGGCNSDIG SGNYLGCMGT FFHPECFRCH SCGYAITEHE
201: FSLSGTKPYH KLCFKELTHP KCEVCHHFIP TNDAGLIEYR CHPFWNQKYC PSHEYDKTAR CCSCERLESW DVRYYTLEDG RSLCLECMET AITDTGECQP
301: LYHAIRDYYE GMYMKLDQQI PMLLVQREAL NDAIVGEKNG YHHMPETRGL CLSEEQTVTS VLRRPRLGAH RLVGMRTQPQ RLTRKCEVTA ILVLYGLPRL
401: LTGAILAHEL MHGWLRLNGF RNLNPEVEEG ICQVLSYMWL ESEVLSDPST RNLPSTSSVA TSSSSSFSNK KGGKSNVEKK LGEFFKHQIA HDASPAYGGG
501: FRAANAAACK YGLRRTLDHI RLTGTFPL

Arabidopsis Description

DAR2DA1-related protein 2 [Source:TAIR;Acc:AT2G39830]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.