Factsheet for PGSC0003DMT400043506

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g079840.2.1	Tomato	cytosol	98.97	98.97
GSMUA_Achr9P07650_001	Banana	cytosol	50.62	76.4
TraesCS2D01G016500.1	Wheat	cytosol	34.16	75.45
GSMUA_Achr6P28210_001	Banana	cytosol	72.63	74.0
VIT_18s0001g11820.t01	Wine grape	cytosol	72.43	73.49
Os06t0182500-02	Rice	cytosol	70.78	70.78
KRH05774	Soybean	cytosol	66.05	67.15
KRH15264	Soybean	cytosol	66.67	67.08
TraesCS2B01G007700.1	Wheat	cytosol	68.93	66.47
KXG19479	Sorghum	cytosol	69.96	66.41
Zm00001d035844_P004	Maize	cytosol	69.34	66.34
TraesCS2D01G016900.1	Wheat	cytosol	68.72	66.27
TraesCSU01G007800.1	Wheat	cytosol	68.52	66.07
PGSC0003DMT400026022	Potato	cytosol	69.55	65.5
GSMUA_Achr7P00700_001	Banana	endoplasmic reticulum	58.64	63.9
Bra016514.1-P	Field mustard	cytosol	60.08	63.2
CDY41035	Canola	cytosol, mitochondrion	64.61	61.93
CDY26685	Canola	cytosol, mitochondrion	64.4	61.74
GSMUA_Achr4P23130_001	Banana	mitochondrion	60.29	61.17
CDX83776	Canola	cytosol	64.2	61.06
TraesCS5D01G072300.1	Wheat	nucleus	61.11	60.86
TraesCS5A01G060800.1	Wheat	cytosol	61.11	60.86
Os12t0596800-01	Rice	plasma membrane	60.29	60.29
Os03t0626600-01	Rice	plasma membrane	60.91	60.29
CDX96669	Canola	cytosol	63.17	60.08
Bra025725.1-P	Field mustard	cytosol, mitochondrion	64.4	59.39
AT1G19270.1	Thale cress	cytosol, mitochondrion	64.61	59.02
EES16286	Sorghum	cytosol	60.49	57.87
TraesCS5B01G071300.1	Wheat	mitochondrion	61.11	57.56
OQU91328	Sorghum	cytosol, mitochondrion	59.67	57.43
Zm00001d033297_P003	Maize	cytosol, mitochondrion	58.64	56.66
GSMUA_Achr9P07640_001	Banana	cytosol	18.11	56.41
PGSC0003DMT400069927	Potato	cytosol	51.03	55.36
Zm00001d033289_P001	Maize	cytosol	11.52	54.37
TraesCS4A01G245200.2	Wheat	cytosol	57.41	51.76
TraesCS4B01G070200.1	Wheat	cytosol	57.82	51.56
TraesCS4D01G069000.1	Wheat	cytosol	57.61	50.91
Zm00001d030953_P001	Maize	plastid	53.29	46.17
PGSC0003DMT400055872	Potato	cytosol	49.18	45.35
PGSC0003DMT400032779	Potato	cytosol	15.84	36.49
PGSC0003DMT400032774	Potato	cytosol	21.4	36.49
VIT_18s0041g02180.t01	Wine grape	mitochondrion	40.53	28.55
VIT_18s0041g02190.t01	Wine grape	cytosol	19.96	23.21

Protein Annotations

MapMan:19.2.2.1.7	Gene3D:2.10.110.10	InterPro:DA1-like	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0006508	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008285	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987
GO:GO:0016787	GO:GO:0019538	GO:GO:0040007	GO:GO:0043130	GO:GO:0046621	GO:GO:0046872
GO:GO:0048317	GO:GO:0048482	GO:GO:1900057	InterPro:IPR001781	InterPro:IPR003903	UniProt:M1BER7
PFAM:PF00412	PFAM:PF12315	EnsemblPlantsGene:PGSC0003DMG400016890	PGSC:PGSC0003DMG400016890	EnsemblPlants:PGSC0003DMT400043506	ScanProsite:PS00478
PFscan:PS50023	PFscan:PS50330	PANTHER:PTHR24209	PANTHER:PTHR24209:SF11	SMART:SM00132	SMART:SM00726
SUPFAM:SSF57716	InterPro:UIM_dom	UniParc:UPI0002962682	InterPro:Znf_LIM	SEG:seg	:

Description

LIM domain containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016890]

Coordinates

chr4:+:69162970..69171207

Molecular Weight (calculated)

55273.2 Da

IEP (calculated)

6.324

GRAVY (calculated)

-0.586

Length

486 amino acids

Sequence
(BLAST)

001: MGWLNKIFKG SSHKVSEGQY DWRCEGHTEG DDPSTAEDSW SEIEEIDRAI AISLSEEEQK GKVVIDSESQ LKEDEQLARA LQESLNVESP PQHVSRNDHG
101: GGNVYGNGNF YHPVPFPYSA SFRVCAGCST EIGHGRFLSC MGAVWHPECF RCHACNQPIS DYEFSMSGNY PYHKTCYKEH YHPKCDVCKH FIPTNAAGLI
201: EYRAHPFWSQ KYCPFHEHDG TPRCCSCERM EPRDTRYIAL DDGRKLCLEC LDSAIMDTSQ CQPLYYDIQE FYEGLNMKVE QKVPLLLVER QALNEAMDGE
301: RHGYHHMPET RGLCLSEEQT ISTIQRRPRI GAGNRVMDMR TEPYKLTRRC EVTAILILYG LPRLLTGSIL AHEMMHAWLR LRGYRTLSQD VEEGICQVLA
401: HMWLETQIAS VSSSNGGAST SSGMSSSKQG IRSPFERKLG DFFKHQIESD TSPIYGNGFR AGNQAVLKYG LERTLDHIRM TGTFPY

Best Arabidopsis Sequence Match ( AT1G19270.1 )
(BLAST)

001: MGWFNKIFKG SNQRLRVGNN KHNHNVYYDN YPTASHDDEP SAADTDADND EPHHTQEPST SEDNTSNDQE NEDIDRAIAL SLLEENQEQT SISGKYSMPV
101: DEDEQLARAL QESMVVGNSP RHKSGSTYDN GNAYGAGDLY GNGHMYGGGN VYANGDIYYP RPITFQMDFR ICAGCNMEIG HGRFLNCLNS LWHPECFRCY
201: GCSQPISEYE FSTSGNYPFH KACYRERYHP KCDVCSHFIP TNHAGLIEYR AHPFWVQKYC PSHEHDATPR CCSCERMEPR NTRYVELNDG RKLCLECLDS
301: AVMDTMQCQP LYLQIQNFYE GLNMKVEQEV PLLLVERQAL NEAREGEKNG HYHMPETRGL CLSEEQTVST VRKRSKHGTG KWAGNITEPY KLTRQCEVTA
401: ILILFGLPRL LTGSILAHEM MHAWMRLKGF RTLSQDVEEG ICQVMAHKWL DAELAAGSTN SNAASSSSSS QGLKKGPRSQ YERKLGEFFK HQIESDASPV
501: YGDGFRAGRL AVHKYGLRKT LEHIQMTGRF PV

Arabidopsis Description

DA1DA1 [Source:UniProtKB/TrEMBL;Acc:A0A178WC71]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.