CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
plastid 1
mitochondrion 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36300	Soybean	cytosol	96.17	96.12
Solyc01g006350.2.1	Tomato	endoplasmic reticulum, nucleus	49.08	83.26
PGSC0003DMT400082009	Potato	cytosol, endoplasmic reticulum, mitochondrion, plasma membrane	49.92	82.84
VIT_06s0004g01200.t01	Wine grape	cytosol	76.43	79.48
CDY05323	Canola	golgi, plasma membrane	49.61	78.62
AT3G07160.2	Thale cress	cytosol	76.8	77.33
CDY24642	Canola	cytosol	76.69	76.53
Bra029628.1-P	Field mustard	cytosol	76.64	76.32
CDY67747	Canola	mitochondrion	25.67	75.93
CDY08011	Canola	cytosol	74.02	74.17
Bra001239.1-P	Field mustard	mitochondrion	73.54	73.47
GSMUA_Achr5P11660_001	Banana	cytosol, peroxisome, plasma membrane	62.89	73.45
KRH55582	Soybean	extracellular, plasma membrane	3.2	72.62
Os03t0119500-01	Rice	plasma membrane	71.76	71.72
CDY67918	Canola	cytosol, nucleus, plasma membrane	35.7	71.65
CDX74058	Canola	mitochondrion	73.33	71.49
HORVU4Hr1G085510.11	Barley	cytosol	71.44	71.48
TraesCS4D01G346600.1	Wheat	golgi	71.34	71.38
TraesCS4B01G351900.1	Wheat	cytosol	71.44	71.37
CDY34913	Canola	cytosol	70.66	71.18
Solyc01g006360.2.1	Tomato	nucleus	28.5	71.17
KXG40330	Sorghum	cytosol	71.29	71.1
Bra040364.1-P	Field mustard	cytosol	71.13	70.91
TraesCS5A01G520600.3	Wheat	cytosol	71.39	70.87
Zm00001d027392_P003	Maize	cytosol	70.87	70.42
GSMUA_Achr5P11670_001	Banana	cytosol	10.39	67.81
KRH63708	Soybean	endoplasmic reticulum	55.38	66.31
KRH54243	Soybean	endoplasmic reticulum	55.54	65.84
KRH53895	Soybean	cytosol	23.83	55.5
KRH55958	Soybean	plasma membrane	23.62	55.21
KRH54242	Soybean	cytosol	7.82	50.68
KRH63709	Soybean	cytosol	8.14	50.32
KRH21444	Soybean	mitochondrion	34.17	45.02
KRH46871	Soybean	mitochondrion	45.98	44.74
KRH22386	Soybean	cytosol, plasma membrane, plastid	40.89	44.69
KRH01816	Soybean	cytosol	45.93	44.69
KRH43561	Soybean	mitochondrion	45.41	44.43
KRH13867	Soybean	mitochondrion	45.35	44.35
KRH43553	Soybean	mitochondrion, plastid	44.2	44.22
KRH59571	Soybean	cytosol	45.41	44.18
KRH64044	Soybean	plastid	45.14	44.08
KRH46038	Soybean	cytosol	42.36	43.65
KRG98933	Soybean	cytosol, plastid	43.52	43.22
KRH10873	Soybean	plasma membrane	40.52	42.91
KRH25579	Soybean	golgi, mitochondrion, plasma membrane	7.72	42.86
KRH08806	Soybean	extracellular	1.36	42.62
KRH46028	Soybean	cytosol	40.42	41.24
KRG98945	Soybean	cytosol	41.1	39.99
KRH13524	Soybean	cytosol	40.68	39.44
KRH36298	Soybean	plasma membrane	3.52	39.41
KRH21823	Soybean	cytosol	40.58	39.34
KRG93040	Soybean	plasma membrane	16.06	37.64
KRH00819	Soybean	cytosol, extracellular	1.47	34.57
KRH25578	Soybean	mitochondrion	8.45	33.33
KRH46035	Soybean	cytosol, plastid	0.94	25.35
KRG94407	Soybean	extracellular	1.0	22.35

Protein Annotations

KEGG:00500+2.4.1.34	EntrezGene:100811473	MapMan:21.7.1	EMBL:ACUP02012778	InterPro:FKS1-like_dom1	EnsemblPlantsGene:GLYMA_20G244900
GO:GO:0000148	GO:GO:0003674	GO:GO:0003824	GO:GO:0003843	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0005975	GO:GO:0006075	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	InterPro:Glyco_trans_48	UniProt:I1NJA0
EnsemblPlants:KRG93041	ProteinID:KRG93041	ProteinID:KRG93041.1	PFAM:PF02364	PFAM:PF14288	PANTHER:PTHR12741
PANTHER:PTHR12741:SF12	MetaCyc:PWY-6773	SMART:SM01205	TMHMM:TMhelix	UniParc:UPI000233DE80	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:47491059..47549697

Molecular Weight (calculated)

219192.0 Da

IEP (calculated)

8.593

GRAVY (calculated)

-0.045

Length

1905 amino acids

Sequence
(BLAST)

0001: MSRAEELWER LVRAALRRER TGDDAYGQPV GGIAGNVPSA LAKNRDIDEI LRVADEIEDD DPNISRILCE HAYSLSQNLD PNSEGRGVLQ FKTGLMSVIK
0101: QKLAKREAGT IDRSQDIARL QEFYKSYREK HNVDKLREEE MKLRESGAFS RDLGELERKT VKRKRVFATL KVLGTVLEQL SEEIPDELKR VMDSDSALTE
0201: DLVAYNIIPL DASSSTNAIV YFPEVQAAVS ALKYFNGLPE LPRGYFLQPT RNANMFDFLQ CTFGFQKDNV ANQHEHIVHL LANEQSRLRI PEGAEPKLDE
0301: VAVQEIFLKS LQNYIKWCDY LGIQPVWSSL EAVSKEKKLL YVSLYFLIWG EASNIRFLPE CLCYIYHHMA REMDEILRQQ IAQPANSCTY DSKDGVSFLD
0401: NVIFPLYDIV SAEAANNDNG KAPHSSWRNY DDFNEYFWSL RCFELSWPWR KTSSFFQKPL PRSKRMLISG SSRHQGKTSF VEHRTFFHLY HSFHRLWIFL
0501: FMMFQGLTIL AFNDGKFNAK TLREILSLGP TFVVMKLFES VLDIFMMYGA YSTTRRLAVS RIFLRFLWFS LASVFITFLY VKALQEESKS NGNSVVFRLY
0601: VIVIGIYAGV QFFISFLMRI PACHRLTNQC GRWPLVHFVK WLRQERHYVG RGMYERSSDF IKYMLFWLVI LSGKFAFAYF LQIRPLVKPT KAIIIADNIN
0701: YSWHDFVSKN NHNALTVVSV WAPVVAIYLL DIYVFYTLVS AVYGFLLGAR DRLGEIRSLE ALHKLFEQFP GAFMDTLHVP LPNRSSHQSS VQVVENSKAD
0801: AARFAPFWNE IIRNLREEDY VTNFEMELLL MPRNSGDLPL VQWPLFLLAS KIFLARDIAV ESKDTQDELW DRISRDDYMM YAVQECYYTI KFILTEILDD
0901: VGRKWVERIY DDINASITKR SIDGDFKLSK LAVVISRVTA LMGILKETET PELERGAVRA VQDLYDVMRH DVLSINLREN YDTWSLLSKA RDEGHLFEKL
1001: KWPKNTDLKM QVKRLYSLLT IKESASSIPK NLEARRRLQF FTNSLFMKMP RAKPVREMLS FSVFTPYYSE IVLYSMAELL KKNEDGISIL FYLQKIYPDE
1101: WKNFLARIGR DENTLESELY DNPGDILELR FWASYRGQTL ARTVRGMMYY RKALMLQTYL ERTTAGDLEA AIGCDEVTNT HGFELSPEAR AQADLKFTYV
1201: VTCQIYGKQK EEQKPEAADI ALLMQRNEAL RVAFIDVVET LKEGKVNTEY YSKLVKADIN GKDKEIYSVK LPGNPKLGEG KPENQNHAII FTRGNAVQTI
1301: DMNQDNYFEE ALKMRNLLEE FHSDHGLRPP TILGVREHVF TGSVSSLASF MSNQETSFVT LGQRVLANPL KVRMHYGHPD VFDRIFHITR GGISKASRVI
1401: NISEDIYSGF NSTLRQGNIT HHEYIQVGKG RDVGLNQIAL FEGKVSGGNG EQVLSRDVYR LGQLFDFFRM LSFYFTTVGY YFCTMLTVLT VYAFLYGKAY
1501: LALSGVGEIL EERARINKNT ALSAALNTQF LFQIGIFTAV PMILGFILEQ GFLKAIVSFV TMQFQLCTVF FTFSLGTRTH YFGRTILHGG ARYQATGRGF
1601: VVRHIKFSEN YRLYSRSHFV KGLEVALLLI VYLAYGYNEG GALSYILLSI SSWFMALSWL FAPYLFNPSG FEWQKVVEDF RDWTNWLLYR GGIGVKGEES
1701: WEAWWEEELA HIRSLGSRIA ETILSLRFFI FQYGIVYKLN VKGTSTSLTV YGLSWVVLAV LIILFKVFTF SQKISVNFQL LLRFIQGISL LVALAGLVVA
1801: VILTELSLPD IFASMLAFIP TGWGILSIAA AWKPVMKRFG LWKSVRSIAR LYDAGMGMLI FVPIAFFSWF PFVSTFQTRL MFNQAFSRGL EISLILAGNN
1901: HNTGI

Best Arabidopsis Sequence Match ( AT3G07160.2 )
(BLAST)

0001: MSRAESSWER LVNAALRRDR TGGVAGGNQS SIVGYVPSSL SNNRDIDAIL RAADEIQDED PNIARILCEH GYSLAQNLDP NSEGRGVLQF KTGLMSVIKQ
0101: KLAKREVGTI DRSQDILRLQ EFYRLYREKN NVDTLKEEEK QLRESGAFTD ELERKTVKRK RVFATLKVLG SVLEQLAKEI PEELKHVIDS DAAMSEDTIA
0201: YNIIPLDAPV TTNATTTFPE VQAAVAALKY FPGLPKLPPD FPIPATRTAD MLDFLHYIFG FQKDSVSNQR EHIVLLLANE QSRLNIPEET EPKLDDAAVR
0301: KVFLKSLENY IKWCDYLCIQ PAWSNLEAIN GDKKLLFLSL YFLIWGEAAN IRFLPECLCY IFHHMVREMD EILRQQVARP AESCMPVDSR GSDDGVSFLD
0401: HVIAPLYGVV SAEAFNNDNG RAPHSAWRNY DDFNEYFWSL HSFELGWPWR TSSSFFQKPI PRKKYELKTG RAKHRGKTSF VEHRTFLHLY HSFHRLWIFL
0501: AMMFQALAII AFNKDDLTSR KTLLQILSLG PTFVVMKFSE SVLEVIMMYG AYSTTRRLAV SRIFLRFIWF GLASVFISFL YVKSLKAPNS DSPIVQLYLI
0601: VIAIYGGVQF FFSILMRIPT CHNIANKCDR WPVIRFFKWM RQERHYVGRG MYERTSDFIK YLLFWLVVLS AKFSFAYFLQ IKPLVGPTRM IVKQNNIPYS
0701: WHDFVSRKNY NALTVASLWA PVVAIYLLDI HIFYTIFSAF LGFLLGARDR LGEIRSLEAI HKLFEEFPGA FMRALHVPLT NRTSDTSHQT VDKKNKVDAA
0801: HFAPFWNQII KSLREEDYIT DFEMELLLMP KNSGRLELVQ WPLFLLSSKI LLAKEIAAES NSQEEILERI ERDDYMKYAV EEVYHTLKLV LTETLEAEGR
0901: LWVERIYEDI QTSLKERNIH HDFQLNKLSL VITRVTALLG ILKENETPEH AKGAIKALQD LYDVMRLDIL TFNMRGHYET WNLLTQAWNE GRLFTKLKWP
1001: KDPELKALVK RLYSLFTIKD SAAHVPRNLE ARRRLQFFTN SLFMDVPPPK SVRKMLSFSV FTPYYSEVVL YSMAELTKRN EDGISILFYL QKIYPDEWKN
1101: FLARIGRDEN ALEGDLDNER DILELRFWAS YRGQTLARTV RGMMYYRKAL MLQSYLERKA GNDATDAEGF ELSPEARAQA DLKFTYVVTC QIYGRQKEDQ
1201: KPEAVDIALL MQRNEALRIA YIDVVDSPKE GKSHTEYYSK LVKADISGKD KEIYSIKLPG DPKLGEGKPE NQNHAIVFTR GNAIQTIDMN QDNYFEEALK
1301: MRNLLEEFDR DHGIRPPTIL GVREHVFTGS VSSLASFMSN QETSFVTLGQ RVLAKPLKIR MHYGHPDVFD RVFHITRGGI SKASRVINIS EDIFAGFNTT
1401: LRQGNVTHHE YIQVGKGRDV GLNQIALFEG KVAGGNGEQV LSRDVYRLGQ LLDFFRMMSF FFTTVGFYLC TMLTVLTVYI FLYGRAYLAL SGVGATIRER
1501: AILLDDTALS AALNAQFLFQ IGVFTAVPMV LGFILEQGFL QAIVSFITMQ FQLCTVFFTF SLGTRTHYFG RTILHGGARY QATGRGFVVK HIKFSENYRL
1601: YSRSHFVKAM EVILLLVVYL AYGNDEAGAV SYILLTVSSW FLAVSWLFAP YLFNPAGFEW QKVVEDFKEW TNWLFYRGGI GVKGAESWEA WWEEELSHIR
1701: TLSGRIMETI LSLRFFIFQY GIVYKLKLQG SDTSFAVYGW SWVAFAMIIV LFKVFTFSQK ISVNFQLLLR FIQGLSLLMA LAGIIVAVVL TPLSVTDIFA
1801: CVLAFIPTGW GILSIACAWK PVLKRMGMWK SIRSLARLYD ALMGMLIFLP VALCSWFPFV STFQTRMMFN QAFSRGLEIS LILAGDNPNS GL

Arabidopsis Description

ATGSL10Glucan synthase-like 10 [Source:UniProtKB/TrEMBL;Acc:A0A178V7F9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.