Factsheet for PGSC0003DMT400082009

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol, plasma membrane

Predictor Summary:

plastid 2
mitochondrion 3
endoplasmic reticulum 1
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006350.2.1	Tomato	endoplasmic reticulum, nucleus	95.56	97.68
CDY67747	Canola	mitochondrion	42.07	75.0
CDY05323	Canola	golgi, plasma membrane	77.53	74.04
PGSC0003DMT400039392	Potato	plasma membrane	68.82	66.95
PGSC0003DMT400073787	Potato	plasma membrane	50.96	53.77
PGSC0003DMT400018166	Potato	cytosol	9.49	53.43
PGSC0003DMT400074555	Potato	plasma membrane	21.34	53.38
PGSC0003DMT400034375	Potato	cytosol, mitochondrion, peroxisome, plasma membrane	25.78	53.33
GSMUA_Achr5P11660_001	Banana	cytosol, peroxisome, plasma membrane	73.52	51.75
KRH36300	Soybean	cytosol	83.1	50.05
KRG93041	Soybean	mitochondrion	82.84	49.92
VIT_06s0004g01200.t01	Wine grape	cytosol	78.31	49.07
AT3G07160.2	Thale cress	cytosol	78.22	47.46
CDY24642	Canola	cytosol	77.7	46.73
Bra029628.1-P	Field mustard	cytosol	77.61	46.58
CDY08011	Canola	cytosol	76.05	45.92
Bra001239.1-P	Field mustard	mitochondrion	75.61	45.52
Os03t0119500-01	Rice	plasma membrane	74.39	44.81
TraesCS4D01G346600.1	Wheat	golgi	74.13	44.7
TraesCS4B01G351900.1	Wheat	cytosol	74.22	44.68
HORVU4Hr1G085510.11	Barley	cytosol	73.95	44.59
CDX74058	Canola	mitochondrion	75.87	44.58
KXG40330	Sorghum	cytosol	74.04	44.5
TraesCS5A01G520600.3	Wheat	cytosol	73.95	44.24
Zm00001d027392_P003	Maize	cytosol	73.87	44.24
CDY34913	Canola	cytosol	71.86	43.63
Bra040364.1-P	Field mustard	cytosol	71.34	42.86
PGSC0003DMT400047243	Potato	cytosol	50.52	32.81
PGSC0003DMT400076360	Potato	plasma membrane	49.83	32.39
PGSC0003DMT400082011	Potato	mitochondrion	53.14	31.31
PGSC0003DMT400065769	Potato	nucleus, plasma membrane, vacuole	3.83	28.95
CDY67918	Canola	cytosol, nucleus, plasma membrane	11.85	14.33
PGSC0003DMT400018165	Potato	cytosol, peroxisome, plasma membrane	13.24	12.6
Solyc01g006360.2.1	Tomato	nucleus	3.14	4.72
GSMUA_Achr5P11670_001	Banana	cytosol	0.35	1.37

Protein Annotations

KEGG:00500+2.4.1.34	MapMan:21.7.1	ncoils:Coil	GO:GO:0000148	GO:GO:0003674	GO:GO:0003824
GO:GO:0003843	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005975	GO:GO:0006075
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016740	InterPro:Glyco_trans_48	UniProt:M1D5G5	PFAM:PF02364	EnsemblPlantsGene:PGSC0003DMG400032200	PGSC:PGSC0003DMG400032200
EnsemblPlants:PGSC0003DMT400082009	PANTHER:PTHR12741	PANTHER:PTHR12741:SF12	TMHMM:TMhelix	UniParc:UPI000296A233	SEG:seg

Description

1,3-beta-glucan synthase [Source:PGSC_GENE;Acc:PGSC0003DMG400032200]

Coordinates

chr1:-:1828099..1849607

Molecular Weight (calculated)

131151.0 Da

IEP (calculated)

8.141

GRAVY (calculated)

0.008

Length

1148 amino acids

Sequence
(BLAST)

0001: MHKRFERFPE AFMNSLHVPL RTRASLLSSG LVLERNKADA ARFAPFWNEI VKNLREEDYI TNLEMEQLLI PKNSGSLPLV QWPLFLLASK IFLAKDIAVE
0101: SKDSQDELWD RISRDDYMIY AVEECYYAIK FVLTSILDDE GNDEGKKWVE RIYEDIHGNI TKRSINAVVD MNKLPLVIQK VTALMGILKK EHTPELETGA
0201: VKAIQDLYDV LRLDVLRFNM RDHIDTWNTL SKARNEGRLF SKLKWPRDAE LKELIKRLYS LLTIKESAAN IPKNLEARRR LEFFTNSLFM EMPVARPVRE
0301: MLSFSVFTPY YSETVLYSMS ELLKKNEDGI SILFYLQKIY PDEWKNFLAR IGRDENISEK ELNDNPNDIL ELRFWASYRG QTLARTVRGM MYYRKALMLQ
0401: SYLEGMITGD TEAGTTPNET TDTQGFDLSP ESRAQADLKF TYVVTCQIYG KQKEEQKPEA ADIALLMQRN EALRVAFIDE VETLKDGKVN KEYISKLVKA
0501: DINGKDKEIY SIKLPGNPKL GEGKPENQNH AIVFTRGNAV QTIDMNQDNY FEEALKVRNL LEEFFQDYGI RLPTILGVRE HVFTGSVSSL ASFMSNQEAS
0601: FVTMGQRVLA NPLKVRMHYG HPDVFDRIFH ITRGGISKAS RVINISEDIF AGFNSTLRQG NITHHEYIQV GKGRDVGLNQ IALFEGKVAG GNGEQVLSRD
0701: VYRLGQLFDF FRMLSFYFTT VGYYFCTMLT VLSVYAFLYG KAYLALSGVG ATIKDRDDIL ENTALSAALN AQFLFQIGVF TAVPMILGFI LEQGFLRAVV
0801: GFVTMQFQLC TVFFTFSLGT RTHYFGRTIL HGGAKYHATG RGFVVKHIKF TENYRLYSRS HFVKGMEIVL LLVVYAAYGY NEGGALSYIL LTVSSWFLAI
0901: SWLFAPYLFN PAGFEWQKTV EDFRDWTNWL LYRGGIGVKG EESWEAWWDE ELAHIRTFGG RVMETILSLR FFIFQYGIVY KLDVQGTNTS LTVYGFSWVA
1001: FAVILLLFKV FTFSQKISVN FQLLLRFVQG LSFLLAVAGL AAAVILTELT VTDVFACILA FIPTGWGILS IAAAWKPLIK KIGMWKSFRS VARLFDAGMG
1101: VLIFIPIALF SWFPFISTFQ TRLMFNQAFS RGLEISLILA GNNPNTGL

Best Arabidopsis Sequence Match ( AT3G07160.2 )
(BLAST)

0001: MSRAESSWER LVNAALRRDR TGGVAGGNQS SIVGYVPSSL SNNRDIDAIL RAADEIQDED PNIARILCEH GYSLAQNLDP NSEGRGVLQF KTGLMSVIKQ
0101: KLAKREVGTI DRSQDILRLQ EFYRLYREKN NVDTLKEEEK QLRESGAFTD ELERKTVKRK RVFATLKVLG SVLEQLAKEI PEELKHVIDS DAAMSEDTIA
0201: YNIIPLDAPV TTNATTTFPE VQAAVAALKY FPGLPKLPPD FPIPATRTAD MLDFLHYIFG FQKDSVSNQR EHIVLLLANE QSRLNIPEET EPKLDDAAVR
0301: KVFLKSLENY IKWCDYLCIQ PAWSNLEAIN GDKKLLFLSL YFLIWGEAAN IRFLPECLCY IFHHMVREMD EILRQQVARP AESCMPVDSR GSDDGVSFLD
0401: HVIAPLYGVV SAEAFNNDNG RAPHSAWRNY DDFNEYFWSL HSFELGWPWR TSSSFFQKPI PRKKYELKTG RAKHRGKTSF VEHRTFLHLY HSFHRLWIFL
0501: AMMFQALAII AFNKDDLTSR KTLLQILSLG PTFVVMKFSE SVLEVIMMYG AYSTTRRLAV SRIFLRFIWF GLASVFISFL YVKSLKAPNS DSPIVQLYLI
0601: VIAIYGGVQF FFSILMRIPT CHNIANKCDR WPVIRFFKWM RQERHYVGRG MYERTSDFIK YLLFWLVVLS AKFSFAYFLQ IKPLVGPTRM IVKQNNIPYS
0701: WHDFVSRKNY NALTVASLWA PVVAIYLLDI HIFYTIFSAF LGFLLGARDR LGEIRSLEAI HKLFEEFPGA FMRALHVPLT NRTSDTSHQT VDKKNKVDAA
0801: HFAPFWNQII KSLREEDYIT DFEMELLLMP KNSGRLELVQ WPLFLLSSKI LLAKEIAAES NSQEEILERI ERDDYMKYAV EEVYHTLKLV LTETLEAEGR
0901: LWVERIYEDI QTSLKERNIH HDFQLNKLSL VITRVTALLG ILKENETPEH AKGAIKALQD LYDVMRLDIL TFNMRGHYET WNLLTQAWNE GRLFTKLKWP
1001: KDPELKALVK RLYSLFTIKD SAAHVPRNLE ARRRLQFFTN SLFMDVPPPK SVRKMLSFSV FTPYYSEVVL YSMAELTKRN EDGISILFYL QKIYPDEWKN
1101: FLARIGRDEN ALEGDLDNER DILELRFWAS YRGQTLARTV RGMMYYRKAL MLQSYLERKA GNDATDAEGF ELSPEARAQA DLKFTYVVTC QIYGRQKEDQ
1201: KPEAVDIALL MQRNEALRIA YIDVVDSPKE GKSHTEYYSK LVKADISGKD KEIYSIKLPG DPKLGEGKPE NQNHAIVFTR GNAIQTIDMN QDNYFEEALK
1301: MRNLLEEFDR DHGIRPPTIL GVREHVFTGS VSSLASFMSN QETSFVTLGQ RVLAKPLKIR MHYGHPDVFD RVFHITRGGI SKASRVINIS EDIFAGFNTT
1401: LRQGNVTHHE YIQVGKGRDV GLNQIALFEG KVAGGNGEQV LSRDVYRLGQ LLDFFRMMSF FFTTVGFYLC TMLTVLTVYI FLYGRAYLAL SGVGATIRER
1501: AILLDDTALS AALNAQFLFQ IGVFTAVPMV LGFILEQGFL QAIVSFITMQ FQLCTVFFTF SLGTRTHYFG RTILHGGARY QATGRGFVVK HIKFSENYRL
1601: YSRSHFVKAM EVILLLVVYL AYGNDEAGAV SYILLTVSSW FLAVSWLFAP YLFNPAGFEW QKVVEDFKEW TNWLFYRGGI GVKGAESWEA WWEEELSHIR
1701: TLSGRIMETI LSLRFFIFQY GIVYKLKLQG SDTSFAVYGW SWVAFAMIIV LFKVFTFSQK ISVNFQLLLR FIQGLSLLMA LAGIIVAVVL TPLSVTDIFA
1801: CVLAFIPTGW GILSIACAWK PVLKRMGMWK SIRSLARLYD ALMGMLIFLP VALCSWFPFV STFQTRMMFN QAFSRGLEIS LILAGDNPNS GL

Arabidopsis Description

ATGSL10Glucan synthase-like 10 [Source:UniProtKB/TrEMBL;Acc:A0A178V7F9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.