CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46240.1	KRG89812	AT3G56800.1	16003391
AT2G46240.1	KRG94975	AT3G56800.1	16003391
AT2G46240.1	KRH18664	AT3G56800.1	16003391
AT2G46240.1	KRG89812	AT5G21274.1	16003391
AT2G46240.1	KRG94975	AT5G21274.1	16003391
AT2G46240.1	KRH18664	AT5G21274.1	16003391

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75967	Soybean	nucleus	62.89	73.88
KRH65782	Soybean	cytosol	46.69	58.7
KRH47996	Soybean	cytosol	68.04	39.76
KRH06550	Soybean	nucleus	47.72	27.93
Zm00001d048489_P001	Maize	cytosol, nucleus, plastid	9.43	21.48
CDX80000	Canola	nucleus	12.96	17.22
Zm00001d005246_P001	Maize	nucleus	8.69	15.21
Bra004553.1-P	Field mustard	nucleus	13.99	14.16
Zm00001d045678_P001	Maize	cytosol	11.78	12.23
GSMUA_Achr10P...	Banana	nucleus	14.87	11.92
Zm00001d046131_P001	Maize	nucleus	5.15	11.74
CDY42022	Canola	nucleus	14.43	10.77
TraesCS4B01G382700.2	Wheat	cytosol	16.79	10.47
Solyc01g095320.2.1	Tomato	nucleus	14.58	10.19
AT2G46240.1	Thale cress	cytosol	15.61	10.16
PGSC0003DMT400000246	Potato	nucleus	17.67	9.69
VIT_15s0046g01560.t01	Wine grape	nucleus	16.35	9.22
TraesCS4D01G357900.7	Wheat	cytosol	17.53	9.02
TraesCS7B01G388700.4	Wheat	nucleus	16.94	8.73
Zm00001d016070_P004	Maize	nucleus	16.64	8.67
HORVU4Hr1G090660.1	Barley	cytosol	16.05	8.27
OQU84742	Sorghum	nucleus	16.64	8.2
TraesCS5A01G548000.4	Wheat	cytosol	15.76	8.16
Os02t0259900-01	Rice	cytosol, nucleus	4.12	6.32
Os02t0259850-00	Rice	nucleus	0.59	1.59

Protein Annotations

Gene3D:1.20.58.120	MapMan:35.1	UniProt:A0A0R0FAW3	EMBL:ACUP02011363	InterPro:BAG_dom_sf	InterPro:BAG_domain
EnsemblPlantsGene:GLYMA_18G186200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0006457
GO:GO:0008150	GO:GO:0009266	GO:GO:0009506	GO:GO:0009605	GO:GO:0009607	GO:GO:0009628
GO:GO:0009987	GO:GO:0043207	GO:GO:0051087	InterPro:IPR000048	InterPro:IPR003103	InterPro:IPR036533
InterPro:IQ_motif_EF-hand-BS	EnsemblPlants:KRH00024	ProteinID:KRH00024	ProteinID:KRH00024.1	PFAM:PF00612	PFAM:PF02179
PFscan:PS50096	PFscan:PS51035	PANTHER:PTHR33322	PANTHER:PTHR33322:SF4	SMART:SM00264	SUPFAM:SSF63491
UniParc:UPI0006ED8B84	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:44806639..44809541

Molecular Weight (calculated)

75213.2 Da

IEP (calculated)

4.151

GRAVY (calculated)

-0.938

Length

679 amino acids

Sequence
(BLAST)

001: MVAEEAISAD DKDTETLAQE KTEVSAAPPA LQEKNGHGSS SSRSPSPPSS KGNSQATTSE TVKTPVSGTR DKAQPNLNHQ NAPNTSAKVK PKENTILVSE
101: CMTNENKGVD CRDGCQSQMK VNIPSECLKG ARETCPDDDD YKTEDKKAEK GAENMMEETT ESREEKDSST QTDAGRKEGR VLSDADAAVF IQAAYRSYLV
201: RKWELLKKLK QIDEVRKEVT HVQGRVQAFE RSLELQNDDK QKIAIGETIM RLLLKLDTIL GLHPCFREIR KSLARELIIL QERLDSIIAK KPQQQMPDAD
301: VQEHVEITPM NMQSEEHVQK QQEEKVVVPE DSAEGTRDDV KGPCANDGGS ESQSPVDPPS NEGAESVALP NGSDNEDTSQ VVTSDALNSS SDLSESDKMA
401: VESEAKSEAK DNPIAEDIPI EVDKLDKTVW EELLVGVIDE DINDVSIEKE EHDDVRSGSL PAMVNDSAQE GSDSENYAMM ELPLGLHEEH ERDNEMNISN
501: GETWSENEIF IEELHVGLHD EDTTISKDKR DDQAKPKTYK GVLLAQEGEY NADEETSSSI DDTANETQLE QQQKLKEQEE VHSSRVKIEY LKEGELNGDA
601: PMDIRVECKS GEEAGTDTKL LPLTTQVSDN EPENEDVFSE ANYVNNKLTE PMEFVPSNDT QTEETPKMVA EEAISVDDK

Best Arabidopsis Sequence Match ( AT2G46240.1 )
(BLAST)

0001: MMPVYMDPSQ PCQMRPQEYY YQGFGNNSQH MAMDAPPPCH GSCVHGNFPA YWPPCYPPQV PYHQCCMNRS AFHPPHASYA PSCYVHPPFP VGYQPWFDVE
0101: KDVPGKHHCG KCSSQMCDLK KDRGVVIEEH EPEIEKGEAV LPVRSTNCPY PIIWIPHENA RNQEYRSSLG LGKHNQPPAE VRAPDNMTIQ KSFPESWRGC
0201: FPFDESSMKS LVQNQDSKKA QNGKTVEAPF DISKFKSLLQ GQDMKEAQIQ KNKEELGQLT YPTSWVPSRR KRDDVEASES SNEDRKKMQN GKTVEYPFDI
0301: SMIKSLIQGQ DVKEAQNQKN KEEPGQVPYP IFWIPSYGKR KDVEASESKE SSNEGRNLES CPSDLHRNEG QITQAKGKEG NFECNVLSDA EEKSSVINIP
0401: VANHLQEPRN IPVKLSENHL PKPTEPTKRI AKNEPVKSTK KEQSSSSSEA SKLPPVCLRV DPLPKERNGG SKSVSHPKRM EKSKETKIAA PLSSKKAESR
0501: TVPEACNVKC EDANAEMKMA EGSLNALRTE KGSVESNSNL QEESNGEIIK PCEAKENREQ PAKKSFTEEE AARIIQSMYR GYDVRRWEPI KKLKEIATVR
0601: EQMGDVKKRI EALEASTDQH IEEKEIVVNG ELVMNLLLKL DAVEGLHPSI REFRKALATE LSSIQDKLDS LKNSCASAEK EAVKEQVEIK SQPSDSPVNL
0701: EHSQLTEENK MVSDTNLEKV LRLSPEEHPM SVLNRTDEKQ AESAAETEEG YGLFETLATD SKQATENAAA ASSTTIPEKI GEVETVVPGN PPSADGNGMT
0801: VTNVEENKAM VVESLEEPIN ELPQMVEETE TNSIRDPENA SEVSEAETNS SENENRKGED DIVLHSEKNV ELSELPVGVI DEETQPLSQD PSSSYTREGN
0901: MTAMDPKTAS QEETEVDHSP NNSKGIGQQT SEPQDEKEQS PETEVIVKEQ PLETEVILNE QAPEPEITEP GISKETKKLM EENQRFKETM ETLVKAGREQ
1001: LEVISKLTSR VKSLEKKLSH KKKTQIRRRA SKPMSVSPTD AVL

Arabidopsis Description

BAG6BAG family molecular chaperone regulator 6 [Source:UniProtKB/Swiss-Prot;Acc:O82345]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.