CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92401
CDY57144
CDY65072

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46240.1	CDY57144	AT3G56800.1	16003391
AT2G46240.1	CDY65072	AT3G56800.1	16003391
AT2G46240.1	CDX92401	AT5G21274.1	16003391

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004553.1-P	Field mustard	nucleus	92.76	70.64
CDY42022	Canola	nucleus	71.43	40.11
AT2G46240.1	Thale cress	cytosol	45.21	22.15
Zm00001d048489_P001	Maize	cytosol, nucleus, plastid	12.72	21.81
GSMUA_Achr10P...	Banana	nucleus	23.68	14.29
KRH00024	Soybean	nucleus	17.22	12.96
Zm00001d005246_P001	Maize	nucleus	9.78	12.89
KRH65782	Soybean	cytosol	11.94	11.3
Os02t0259900-01	Rice	cytosol, nucleus	9.78	11.29
Zm00001d045678_P001	Maize	cytosol	13.31	10.4
KRH75967	Soybean	nucleus	11.35	10.03
KRH47996	Soybean	cytosol	21.72	9.55
KRH06550	Soybean	nucleus	21.53	9.48
PGSC0003DMT400000246	Potato	nucleus	22.11	9.12
Solyc01g095320.2.1	Tomato	nucleus	17.22	9.05
TraesCS5A01G548000.4	Wheat	cytosol	23.09	8.99
Zm00001d016070_P004	Maize	nucleus	22.9	8.97
TraesCS7B01G388700.4	Wheat	nucleus	22.11	8.57
Zm00001d046131_P001	Maize	nucleus	4.89	8.39
TraesCS4D01G357900.7	Wheat	cytosol	21.53	8.33
HORVU4Hr1G090660.1	Barley	cytosol	21.14	8.19
OQU84742	Sorghum	nucleus	21.72	8.06
TraesCS4B01G382700.2	Wheat	cytosol	16.83	7.9
VIT_15s0046g01560.t01	Wine grape	nucleus	16.63	7.06
Os02t0259850-00	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:1.20.58.120	MapMan:35.1	GO:A0A078CT40	InterPro:BAG_dom_sf	InterPro:BAG_domain	EnsemblPlants:CDX80000
ProteinID:CDX80000	ProteinID:CDX80000.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0051087	EnsemblPlantsGene:GSBRNA2T00132871001	InterPro:IPR000048	InterPro:IPR003103	InterPro:IPR036533	InterPro:IQ_motif_EF-hand-BS
PFAM:PF02179	PFscan:PS50096	PFscan:PS51035	PANTHER:PTHR33322	PANTHER:PTHR33322:SF4	SMART:SM00264
SUPFAM:SSF63491	UniParc:UPI0004EEBED2	SEG:seg	:	:	:

Description

BnaA05g01560D

Coordinates

chrLK031819:+:1234811..1238265

Molecular Weight (calculated)

56453.2 Da

IEP (calculated)

4.498

GRAVY (calculated)

-0.781

Length

511 amino acids

Sequence
(BLAST)

001: MSEETKVASP LSSKKVETRT IPESCNVKCE EANKEKKSEE CLKPSGTNKD SDSTKSDLQG LKCEIVEPCE TKEKPAKKTF SEEEAARIIQ SRFRGYDVRR
101: WEPITKLKEI ATVRKQMSDV KMRVQALELS ADQHTDGKEI VVLGEMVMSL LLKLDSVQGL HPSIRDYRKS LARELSDMQE NIDSLKKISV EKEQVDTTSQ
201: TSDPLVSLEE RQLAEENKMV SDSNAEKVCP ASSEEHLTSL KNTTDVAEAE EVTGLSETLA TDPKPASETG ICEADSTTIP EKIEAPEAML PINPSSADGN
301: EMTVTNKEDK VMVKKLEEPL PELQQEPQVV ETTDEQAFEG LGNGTEVSEA VADVSETEDR KGDDDSVLPS EKDVELSDLP VGVIDDEVQL LTQDSLSSPG
401: EEKTVVDTET ASKEGTNVDH SFTGISQESK LGMSEETKKL MEENQRFKET VETLVKAGRE QLEVISKLTG RVKSLEKKLS QKKRTHVGRR KPNRGKQTTK
501: PMAASCTDAV M

Best Arabidopsis Sequence Match ( AT2G46240.1 )
(BLAST)

0001: MMPVYMDPSQ PCQMRPQEYY YQGFGNNSQH MAMDAPPPCH GSCVHGNFPA YWPPCYPPQV PYHQCCMNRS AFHPPHASYA PSCYVHPPFP VGYQPWFDVE
0101: KDVPGKHHCG KCSSQMCDLK KDRGVVIEEH EPEIEKGEAV LPVRSTNCPY PIIWIPHENA RNQEYRSSLG LGKHNQPPAE VRAPDNMTIQ KSFPESWRGC
0201: FPFDESSMKS LVQNQDSKKA QNGKTVEAPF DISKFKSLLQ GQDMKEAQIQ KNKEELGQLT YPTSWVPSRR KRDDVEASES SNEDRKKMQN GKTVEYPFDI
0301: SMIKSLIQGQ DVKEAQNQKN KEEPGQVPYP IFWIPSYGKR KDVEASESKE SSNEGRNLES CPSDLHRNEG QITQAKGKEG NFECNVLSDA EEKSSVINIP
0401: VANHLQEPRN IPVKLSENHL PKPTEPTKRI AKNEPVKSTK KEQSSSSSEA SKLPPVCLRV DPLPKERNGG SKSVSHPKRM EKSKETKIAA PLSSKKAESR
0501: TVPEACNVKC EDANAEMKMA EGSLNALRTE KGSVESNSNL QEESNGEIIK PCEAKENREQ PAKKSFTEEE AARIIQSMYR GYDVRRWEPI KKLKEIATVR
0601: EQMGDVKKRI EALEASTDQH IEEKEIVVNG ELVMNLLLKL DAVEGLHPSI REFRKALATE LSSIQDKLDS LKNSCASAEK EAVKEQVEIK SQPSDSPVNL
0701: EHSQLTEENK MVSDTNLEKV LRLSPEEHPM SVLNRTDEKQ AESAAETEEG YGLFETLATD SKQATENAAA ASSTTIPEKI GEVETVVPGN PPSADGNGMT
0801: VTNVEENKAM VVESLEEPIN ELPQMVEETE TNSIRDPENA SEVSEAETNS SENENRKGED DIVLHSEKNV ELSELPVGVI DEETQPLSQD PSSSYTREGN
0901: MTAMDPKTAS QEETEVDHSP NNSKGIGQQT SEPQDEKEQS PETEVIVKEQ PLETEVILNE QAPEPEITEP GISKETKKLM EENQRFKETM ETLVKAGREQ
1001: LEVISKLTSR VKSLEKKLSH KKKTQIRRRA SKPMSVSPTD AVL

Arabidopsis Description

BAG6BAG family molecular chaperone regulator 6 [Source:UniProtKB/Swiss-Prot;Acc:O82345]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.