CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65290.1	KRG91803	AT1G35670.1	19130088
AT1G65290.1	KRH34983	AT1G35670.1	19130088
AT1G65290.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH40273	Soybean	nucleus	96.88	96.88
AT1G65290.1	Thale cress	mitochondrion	72.66	73.81
CDY39292	Canola	mitochondrion	69.53	73.55
VIT_04s0023g00840.t01	Wine grape	mitochondrion	71.09	71.65
Solyc04g015370.2.1	Tomato	mitochondrion	71.09	71.09
PGSC0003DMT400070136	Potato	mitochondrion	70.31	70.31
Solyc05g056240.2.1	Tomato	mitochondrion	71.09	69.47
PGSC0003DMT400060304	Potato	mitochondrion	71.09	69.47
PGSC0003DMT400064261	Potato	mitochondrion	70.31	68.7
CDY16401	Canola	mitochondrion	68.75	67.18
CDX91509	Canola	mitochondrion	68.75	67.18
Bra022484.1-P	Field mustard	mitochondrion	68.75	67.18
CDY37654	Canola	mitochondrion	66.41	64.89
CDY65005	Canola	mitochondrion	66.41	64.89
Bra035355.1-P	Field mustard	mitochondrion	66.41	64.89
KRH37350	Soybean	extracellular, golgi	35.16	57.69
KRH00978	Soybean	mitochondrion	45.31	50.0
KRH40249	Soybean	mitochondrion	45.31	50.0
CDY07443	Canola	mitochondrion	69.53	48.63
Bra004110.1-P	Field mustard	mitochondrion	68.75	48.09
KRH11585	Soybean	plastid	33.59	31.16
KRH36601	Soybean	cytosol	33.59	28.1

Protein Annotations

Gene3D:1.10.1200.10	EntrezGene:100305656	MapMan:5.1.5.1	InterPro:ACP-like_sf	EMBL:ACUP02011484	InterPro:Acyl_carrier
EMBL:BT089370	UniProt:C6SW27	EnsemblPlantsGene:GLYMA_18G244300	GO:GO:0000035	GO:GO:0000036	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005975	GO:GO:0006629	GO:GO:0006633	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009245	GO:GO:0009987	GO:GO:0031177	InterPro:IPR009081	InterPro:IPR036736	EnsemblPlants:KRH00953
ProteinID:KRH00953	ProteinID:KRH00953.1	HAMAP:MF_01217	PFAM:PD000887	PFAM:PF00550	InterPro:PP-bd_ACP
ScanProsite:PS00012	PFscan:PS50075	PANTHER:PTHR20863	PANTHER:PTHR20863:SF37	InterPro:Ppantetheine_attach_site	SUPFAM:SSF47336
TIGRFAMs:TIGR00517	UniParc:UPI0001B159FD	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:53208864..53210903

Molecular Weight (calculated)

14456.4 Da

IEP (calculated)

5.225

GRAVY (calculated)

-0.189

Length

128 amino acids

Sequence
(BLAST)

001: MAASRSTFPL MKYLRVRVDA LPRNTPLTLA PNFLIRRFCE EVRGCFLDKS EVTDRVISCV KNFQKVDPSK VNPNAHFQND LGLDSLDSVE IVMALEEEFG
101: FEIPDNEADK INSIKLAVDF IASHPQAK

Best Arabidopsis Sequence Match ( AT1G65290.1 )
(BLAST)

001: MAARGAMLRY LRVNVNPTIQ NPRECVLPFS ILLRRFSEEV RGSFLDKSEV TDRVLSVVKN FQKVDPSKVT PKANFQNDLG LDSLDSVEVV MALEEEFGFE
101: IPDNEADKIQ SIDLAVDFIA SHPQAK

Arabidopsis Description

MTACP2Acyl carrier protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80800]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.