CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91803
KRH34983
KRH34984

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G65290.1	KRG91803	AT1G35670.1	19130088
AT1G65290.1	KRH34983	AT1G35670.1	19130088
AT1G65290.1	KRH34984	AT1G35670.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00953	Soybean	mitochondrion	96.88	96.88
CDY39292	Canola	mitochondrion	71.09	75.21
AT1G65290.1	Thale cress	mitochondrion	73.44	74.6
VIT_04s0023g00840.t01	Wine grape	mitochondrion	72.66	73.23
Solyc04g015370.2.1	Tomato	mitochondrion	71.88	71.88
PGSC0003DMT400070136	Potato	mitochondrion	71.09	71.09
Solyc05g056240.2.1	Tomato	mitochondrion	71.88	70.23
PGSC0003DMT400060304	Potato	mitochondrion	71.88	70.23
PGSC0003DMT400064261	Potato	mitochondrion	71.09	69.47
CDX91509	Canola	mitochondrion	69.53	67.94
CDY16401	Canola	mitochondrion	69.53	67.94
Bra022484.1-P	Field mustard	mitochondrion	69.53	67.94
CDY37654	Canola	mitochondrion	67.19	65.65
Bra035355.1-P	Field mustard	mitochondrion	67.19	65.65
CDY65005	Canola	mitochondrion	67.19	65.65
KRH37350	Soybean	extracellular, golgi	35.16	57.69
KRH00978	Soybean	mitochondrion	45.31	50.0
KRH40249	Soybean	mitochondrion	45.31	50.0
CDY07443	Canola	mitochondrion	71.09	49.73
Bra004110.1-P	Field mustard	mitochondrion	70.31	49.18
KRH11585	Soybean	plastid	33.59	31.16
KRH36601	Soybean	cytosol	33.59	28.1

Protein Annotations

Gene3D:1.10.1200.10	MapMan:5.1.5.1	InterPro:ACP-like_sf	EMBL:ACUP02006032	InterPro:Acyl_carrier	EnsemblPlantsGene:GLYMA_09G248500
GO:GO:0000035	GO:GO:0000036	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005975	GO:GO:0006629	GO:GO:0006633
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009245	GO:GO:0009987	GO:GO:0031177
UniProt:I1L683	InterPro:IPR009081	InterPro:IPR036736	EnsemblPlants:KRH40273	ProteinID:KRH40273	ProteinID:KRH40273.1
HAMAP:MF_01217	PFAM:PD000887	PFAM:PF00550	InterPro:PP-bd_ACP	ScanProsite:PS00012	PFscan:PS50075
PANTHER:PTHR20863	PANTHER:PTHR20863:SF37	InterPro:Ppantetheine_attach_site	SUPFAM:SSF47336	TIGRFAMs:TIGR00517	UniParc:UPI00023C8720

Description

hypothetical protein

Coordinates

chr9:+:46976055..46978088

Molecular Weight (calculated)

14362.2 Da

IEP (calculated)

5.225

GRAVY (calculated)

-0.193

Length

128 amino acids

Sequence
(BLAST)

001: MAASRSTLPL MKYLRVRVDA LPRNTPLTLA SNLLIRRFSE EVRGCFLDKS EVTDRVISCV KNFQKVDPSK VNPNAHFQND LGLDSLDSVE IVMALEEEFG
101: FEIPDNEADK INSIKLAVDF IASHPQAK

Best Arabidopsis Sequence Match ( AT1G65290.1 )
(BLAST)

001: MAARGAMLRY LRVNVNPTIQ NPRECVLPFS ILLRRFSEEV RGSFLDKSEV TDRVLSVVKN FQKVDPSKVT PKANFQNDLG LDSLDSVEVV MALEEEFGFE
101: IPDNEADKIQ SIDLAVDFIA SHPQAK

Arabidopsis Description

MTACP2Acyl carrier protein 2, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:O80800]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.